View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14526_low_4 (Length: 385)
Name: NF14526_low_4
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 28671106 - 28670747
Alignment:
| Q |
5 |
atgatttagaagggaatgctcaaatttatgacagaaaaagtgaaataaagaaatttgatgagtcaaaggttggtgtccaaggactcatagaaaatggagt |
104 |
Q |
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||||| ||| ||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
28671106 |
atgatgtagcaggaaattctccaatttatgacagaaaaagtgaactaaagaaatttgatgagtcaaaggttggtgtccaaggacttacagaaaatggagt |
28671007 |
T |
|
| Q |
105 |
aacaaaagttccacgtatgttctattctgaacaatccaatactaatcatggtggagccaatcaatcaaattcaaagcttagtatccctacaattgactta |
204 |
Q |
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| T |
28671006 |
aacaaaagttccacgcatgttctattgtgaacaatctaatatcaatcatggttcagtaaatgaatcaaattcaaagcttagtgtccctacaattgactta |
28670907 |
T |
|
| Q |
205 |
acaggaatccaagatgatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcatgtgagaaatggggattctttcaagtattaaatcatg |
304 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
28670906 |
acaggaatcc---atgatgatcctgttttgagagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatg |
28670810 |
T |
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| Q |
305 |
gaattccaacacatgttttggatgagatgatcaaaggaatttgtagatttcaccaacaggatg |
367 |
Q |
| |
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| T |
28670809 |
gaattccaacacagattttggatgagatgatcaatggaacttgtagatttcaccaacaagatg |
28670747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 28651369 - 28651026
Alignment:
| Q |
20 |
atgctcaaatttatgacagaaaaagtgaaataaagaaatttgatgagtcaaaggttggtgtccaaggactcatagaaaatggagtaacaaaagttccacg |
119 |
Q |
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| T |
28651369 |
atgctccaatttatgacaaaaaaagtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggagtaacaaaagttccacg |
28651270 |
T |
|
| Q |
120 |
tatgttctattctgaacaatccaatactaatcatggtggagccaatcaatcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagat |
219 |
Q |
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| T |
28651269 |
catgttctattgtgaacaatctgatatcaacaatggtgcagccagtgaattaaatccaaagcttagtatccctacaattgacttaaaaggaatcca---t |
28651173 |
T |
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| Q |
220 |
gatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcatgtgagaaatggggattctttcaagtattaaatcatggaattccaacacatg |
319 |
Q |
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||||||| || |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28651172 |
gatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatg |
28651073 |
T |
|
| Q |
320 |
ttttggatgagatgatcaaaggaatttgtagatttcaccaacaggat |
366 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||| ||||||||| |
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| T |
28651072 |
ttttgcatgagatgatcaaaggaacttgtagatttcatcaacaggat |
28651026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 367
Target Start/End: Complemental strand, 28675249 - 28674891
Alignment:
| Q |
6 |
tgatttagaagggaatgctcaaatttatgacagaaaaagtgaaataaagaaatttgatgagtcaaaggttggtgtccaaggactcatagaaaatggagta |
105 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
28675249 |
tgatttagcagggaattctcaaatttatgacagaaaaagtgaactaaaaaactttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggtgtc |
28675150 |
T |
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| Q |
106 |
acaaaagttccacgtatgttctattctgaacaatccaatactaatcatggtggagccaatcaatcaaattcaaagcttagtatccctacaattgacttaa |
205 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||| |||| ||| || | || | ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
28675149 |
acaaaagttccacgtatgttccattgtgaacaatctaatatcaatgatctctcaatcagtgaatcaaatttaaagcttagcatccctacaattgacttaa |
28675050 |
T |
|
| Q |
206 |
caggaatccaagatgatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcatgtgagaaatggggattctttcaagtattaaatcatgg |
305 |
Q |
| |
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|||||||||| |||||| |||| ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
28675049 |
caggaatccacgatgatcctctt---ttgagagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatgg |
28674953 |
T |
|
| Q |
306 |
aattccaacacatgttttggatgagatgatcaaaggaatttgtagatttcaccaacaggatg |
367 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
28674952 |
aattccaacacatattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatg |
28674891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 28642508 - 28642165
Alignment:
| Q |
20 |
atgctcaaatttatgacagaaaaagtgaaataaagaaatttgatgagtcaaaggttggtgtccaaggactcatagaaaatggagtaacaaaagttccacg |
119 |
Q |
| |
|
|||||| ||||||||||| ||| |||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28642508 |
atgctccaatttatgacaaaaagagtgaactaaaggagtttgatgagtcaaaggttggtgtccaaggacttgtagaaaatggagtaacaaaagttccaca |
28642409 |
T |
|
| Q |
120 |
tatgttctattctgaacaatccaatactaatcatggtggagccaatcaatcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagat |
219 |
Q |
| |
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|||||||||| ||||||||| | || ||| ||| | || ||| |||||||||||||||| |||||||||||||||||||||| ||||||||| | |
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| T |
28642408 |
catgttctattgtgaacaatctagtatcaatgatgtttcagtgaatgaatcaaattcaaagctaagtatccctacaattgacttaaaaggaatcca---t |
28642312 |
T |
|
| Q |
220 |
gatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcatgtgagaaatggggattctttcaagtattaaatcatggaattccaacacatg |
319 |
Q |
| |
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||||||| || |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28642311 |
gatgatcctgctttgagagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatg |
28642212 |
T |
|
| Q |
320 |
ttttggatgagatgatcaaaggaatttgtagatttcaccaacaggat |
366 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
28642211 |
ttttggatgagatgatcaaaggaacttgtagatttcatcaacaggat |
28642165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 367
Target Start/End: Complemental strand, 28691562 - 28691367
Alignment:
| Q |
169 |
tcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagatgatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcat |
268 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||| || ||||||||| |
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| T |
28691562 |
tcaaattcaaatgttagtatccctacaattgacctaacaggaatcca---tgatgatcttgttttgagagatgaagctgtgagaaaagttgaaaatgcat |
28691466 |
T |
|
| Q |
269 |
gtgagaaatggggattctttcaagtattaaatcatggaattccaacacatgttttggatgagatgatcaaaggaatttgtagatttcaccaacaggatg |
367 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
28691465 |
gtgagaagtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatg |
28691367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 169 - 367
Target Start/End: Complemental strand, 28696447 - 28696252
Alignment:
| Q |
169 |
tcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagatgatgatcttgttttgagagatgaagttgtaagaaaacttcaaaatgcat |
268 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||| | ||||||||||||||| |||||||||||| |||||| ||||||||||| |
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| T |
28696447 |
tcaaattcaaagctaagtatcccaccaattgacctaacaggaatcca---taatgatcttgttttgaaagatgaagttgtgagaaaagttcaaaatgcaa |
28696351 |
T |
|
| Q |
269 |
gtgagaaatggggattctttcaagtattaaatcatggaattccaacacatgttttggatgagatgatcaaaggaatttgtagatttcaccaacaggatg |
367 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
28696350 |
gtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgtagatttcatcaacaagatg |
28696252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 28717651 - 28717570
Alignment:
| Q |
286 |
tttcaagtattaaatcatggaattccaacacatgttttggatgagatgatcaaaggaatttgtagatttcaccaacaggatg |
367 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
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| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatg |
28717570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 28741624 - 28741514
Alignment:
| Q |
162 |
caatcaatcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagatgatgatcttgttttgagagatgaagttgtaagaaaacttcaa |
261 |
Q |
| |
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|||| ||| |||||||||| ||||||||| || |||||| ||| |||||||||| |||||||||||||||||||||| |||||| |||||| ||||| |
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| T |
28741624 |
caatgaatgaaattcaaagattagtatccgtagaattgatttaccaggaatcca---tgatgatcttgttttgagagatacagttgtgagaaaagttcaa |
28741528 |
T |
|
| Q |
262 |
aatgcatgtgagaa |
275 |
Q |
| |
|
||| |||||||||| |
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|
| T |
28741527 |
aattcatgtgagaa |
28741514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 28733432 - 28733372
Alignment:
| Q |
162 |
caatcaatcaaattcaaagcttagtatccctacaattgacttaacaggaatccaagatgat |
222 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||| |||||| ||| |||||||||| |||||| |
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|
| T |
28733432 |
caatgaataaaattcaaagattagtatccctagaattgatttaccaggaatccatgatgat |
28733372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 41238469 - 41238553
Alignment:
| Q |
272 |
agaaatggggattctttcaagtattaaatcatggaattccaacacatgttttggatgagatgatcaaaggaatttgtagatttca |
356 |
Q |
| |
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|||| |||||||| || ||||| | |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41238469 |
agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttca |
41238553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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