View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14526_low_6 (Length: 338)
Name: NF14526_low_6
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16749707 - 16749516
Alignment:
| Q |
1 |
ttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttg |
100 |
Q |
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| T |
16749707 |
ttttatctgaaaaagtgctttgcattttgctctttgtttccaaaagactatcgaattgagaagaaaaagttgattcgactttggattgcacaaggtctcg |
16749608 |
T |
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| Q |
101 |
ttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatatagtc |
192 |
Q |
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| T |
16749607 |
ttcattcatccgatgaaagtacaaatttagaagataatggtgataagtacttcttgactttacttcatagatctatctttcaaggtatagtc |
16749516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 16749498 - 16749421
Alignment:
| Q |
243 |
ctgatctgtctagattcatttctggaaataattatgtcatagtaaatgaaaaggagcagcatattgaaaagggaaccc |
320 |
Q |
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| T |
16749498 |
ctgatctgtctagattcatttctggaaataattatgtcatagtaaatgaaaaggagcagcatattgaaaagggaaccc |
16749421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7495115 - 7495295
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
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| T |
7495115 |
tgaaaaagtgctttgctttttgttcattgtttccaaaagactatttaattgataaaacaaaattgattcgactttggattgcacaagggtttgttcagtc |
7495214 |
T |
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| Q |
108 |
atccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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| T |
7495215 |
atctgatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7495295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 7721696 - 7721517
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
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| T |
7721696 |
tgaaaaagtgctttgctttttgttctttgtttccaaaagactatttaattccaaaacaaca-ttgattcgactttggattgcacaagggtttgttcagtc |
7721598 |
T |
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| Q |
108 |
atccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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| T |
7721597 |
atcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7721517 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7520782 - 7520965
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
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|||||||||| ||||| | ||| || |||||||||||||||||| ||| | || | || |||||||||||||||||||||||||| ||||||| || |
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| T |
7520782 |
tgaaaaagtgctttgctttttgttcattgtttccaaaagactatttcattcataaaacaacattgattcgactttggattgcacaagggtttgttcagtc |
7520881 |
T |
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| Q |
108 |
atcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7520882 |
atcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7520965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7482716 - 7482899
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
| |
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|||||||||| ||||| | ||| || |||||||||||||||| | |||| || | || |||||||||||||||||||||||||| ||||||| || |
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| T |
7482716 |
tgaaaaagtgctttgctttttgttcattgtttccaaaagactttttaatttgtaaaataacattgattcgactttggattgcacaagggtttgttcagtc |
7482815 |
T |
|
| Q |
108 |
atcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7482816 |
atcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7482899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 7128422 - 7128239
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
| |
|
|||||||||| ||||| | ||| || ||||| |||||||||||| |||| || | || ||||||||| |||||||||||||||| ||||||| || |
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| T |
7128422 |
tgaaaaagtgctttgctttttgttcattgttcccaaaagactatttaattcctaaaacaacattgattcgagtttggattgcacaagggtttgttcagtc |
7128323 |
T |
|
| Q |
108 |
atcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||| |||| |
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| T |
7128322 |
atcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataaatctttctttcaaaatat |
7128239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7528832 - 7529015
Alignment:
| Q |
8 |
tgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagttgattcgactttggattgcacaaggtcttgttcattc |
107 |
Q |
| |
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|||||||||| ||||| | ||| ||||||||||||||||||||| ||| || | || |||||||||||||||||||||||||| ||||||| || |
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| T |
7528832 |
tgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaagggtttgttcagtc |
7528931 |
T |
|
| Q |
108 |
atccgatg---aaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatagatctttctttcaagatat |
188 |
Q |
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||| |||| ||||||||| ||||||||| | |||| ||| |||||||||| |||| || ||| ||||||||||||| |||| |
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| T |
7528932 |
atcagatgatgaaagtacaagtttagaagatattggtcatatgtacttcatggatttagtttataaatctttctttcaaaatat |
7529015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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