View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14527_high_2 (Length: 427)
Name: NF14527_high_2
Description: NF14527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14527_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 41705288 - 41704886
Alignment:
| Q |
20 |
ttgagcacagaaccaaactgtggcgatccattctatagacttcgttgcgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatg |
119 |
Q |
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| T |
41705288 |
ttgagcacagaaccaaactgtggcgatccattctatagacttcgttgtgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatg |
41705189 |
T |
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| Q |
120 |
ttgtactaagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatgg |
219 |
Q |
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| T |
41705188 |
ttgtactaagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatgg |
41705089 |
T |
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| Q |
220 |
tatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgc |
319 |
Q |
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| T |
41705088 |
tatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgc |
41704989 |
T |
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| Q |
320 |
tcttcctctagtatttgtcaccgttacttggaaaattcaggtcatgttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgcacct |
419 |
Q |
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| T |
41704988 |
tcttcctctagtatttgtcaccgttacttggaaaattcaggtcaagttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgcacct |
41704889 |
T |
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| Q |
420 |
ttg |
422 |
Q |
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| T |
41704888 |
ttg |
41704886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
139 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
234 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
139 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
234 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
171 |
cttggttacccggttcatgtgtcacacaagacatgcc |
207 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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