View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14527_low_1 (Length: 569)
Name: NF14527_low_1
Description: NF14527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14527_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 32667276 - 32666736
Alignment:
| Q |
18 |
aagaatatactactctgaccaccaagaaatccgtcaagtcaacccggtcgtggtctcagctcttgtctccgtcgcactcctaggaaccgccttcggtcag |
117 |
Q |
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| T |
32667276 |
aagaatatactactccgaccaccaagaaatccgtcaagtcaacccggtcgtggtctcagcccttgtctccgttgcactcctaggaaccgccttcggtcag |
32667177 |
T |
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| Q |
118 |
ctcctattcggacgcctcggagacctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctcca |
217 |
Q |
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| T |
32667176 |
ctcctattcggacgcctcggagacctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctcca |
32667077 |
T |
|
| Q |
218 |
tctgtacaacaaagagagcttgtgttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccat |
317 |
Q |
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| T |
32667076 |
tctgtacaacaaagagagcttgtgttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccat |
32666977 |
T |
|
| Q |
318 |
tatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatg |
417 |
Q |
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| T |
32666976 |
tatgtctgagtttgctaataaaaggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatg |
32666877 |
T |
|
| Q |
418 |
gtggtttgcttggtatttcgcagcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggtt |
517 |
Q |
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| T |
32666876 |
gtggtttgcttggtatttcgcagcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggtt |
32666777 |
T |
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| Q |
518 |
cagttccagctgcattgacttattattggcgtatgatgatg |
558 |
Q |
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| T |
32666776 |
cagttccagctgcattgacttattattggcgtatgatgatg |
32666736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 37315913 - 37315765
Alignment:
| Q |
251 |
ctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagagg |
350 |
Q |
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| T |
37315913 |
ctctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgccaacaaaaagactcgtgg |
37315814 |
T |
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| Q |
351 |
ttcttttatagctgcggttttttctatgcaagggtttggtatattggct |
399 |
Q |
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| T |
37315813 |
cgcgtttatagcttcggtttttgctatgcaagggtttggaattttggct |
37315765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 33109294 - 33109402
Alignment:
| Q |
281 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
380 |
Q |
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| T |
33109294 |
ttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaagaagacgcgaggagcttttatcgctgcagtgtttgctatgca |
33109393 |
T |
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| Q |
381 |
agggtttgg |
389 |
Q |
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| T |
33109394 |
aggatttgg |
33109402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 33115329 - 33115437
Alignment:
| Q |
281 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
380 |
Q |
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|||||||||| |||||||| ||| | || |||| || |||||||||| ||||||||||| ||| | ||| | |||||||| || ||||| ||||||| |
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| T |
33115329 |
ttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaagactcgtggtgcatttatagcggctgttttcgctatgca |
33115428 |
T |
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| Q |
381 |
agggtttgg |
389 |
Q |
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| T |
33115429 |
aggttttgg |
33115437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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