View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14527_low_3 (Length: 398)

Name: NF14527_low_3
Description: NF14527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14527_low_3
NF14527_low_3
[»] chr5 (12 HSPs)
chr5 (1-378)||(9354315-9354693)
chr5 (1-347)||(9333518-9333856)
chr5 (1-183)||(9307113-9307293)
chr5 (183-267)||(18191886-18191971)
chr5 (202-286)||(17037540-17037625)
chr5 (184-230)||(42076046-42076092)
chr5 (242-303)||(37233070-37233131)
chr5 (184-275)||(10869417-10869508)
chr5 (241-275)||(42076084-42076118)
chr5 (184-233)||(12004582-12004630)
chr5 (184-233)||(30655248-30655297)
chr5 (184-233)||(30786246-30786295)
[»] chr3 (8 HSPs)
chr3 (184-305)||(16457330-16457452)
chr3 (184-275)||(27259474-27259566)
chr3 (184-285)||(5498457-5498559)
chr3 (184-287)||(9633459-9633563)
chr3 (241-286)||(26707896-26707941)
chr3 (204-275)||(1654575-1654647)
chr3 (244-305)||(36035329-36035390)
chr3 (184-232)||(24993328-24993376)
[»] chr8 (9 HSPs)
chr8 (184-305)||(29553608-29553730)
chr8 (183-305)||(6403571-6403694)
chr8 (184-275)||(31347328-31347420)
chr8 (187-274)||(5000661-5000749)
chr8 (184-287)||(6801847-6801951)
chr8 (198-233)||(19371341-19371376)
chr8 (184-233)||(19341493-19341542)
chr8 (183-256)||(7292812-7292885)
chr8 (243-287)||(29345470-29345514)
[»] chr2 (5 HSPs)
chr2 (184-305)||(24479131-24479253)
chr2 (202-300)||(44920955-44921053)
chr2 (241-305)||(11017494-11017558)
chr2 (202-303)||(15513664-15513766)
chr2 (184-232)||(32265917-32265965)
[»] chr6 (8 HSPs)
chr6 (184-288)||(29667931-29668038)
chr6 (204-300)||(16734804-16734901)
chr6 (184-233)||(7913474-7913523)
chr6 (204-301)||(15361714-15361812)
chr6 (184-285)||(23264515-23264619)
chr6 (186-233)||(6673690-6673737)
chr6 (183-233)||(1942547-1942597)
chr6 (241-301)||(2941043-2941103)
[»] chr4 (3 HSPs)
chr4 (184-269)||(24559030-24559116)
chr4 (184-275)||(37751019-37751110)
chr4 (241-275)||(48464077-48464111)
[»] chr1 (6 HSPs)
chr1 (183-300)||(12189930-12190048)
chr1 (184-287)||(5911681-5911785)
chr1 (184-286)||(28636882-28636985)
chr1 (241-285)||(3399659-3399703)
chr1 (198-233)||(20427805-20427840)
chr1 (184-233)||(17112904-17112953)
[»] chr7 (4 HSPs)
chr7 (202-300)||(10022121-10022220)
chr7 (202-300)||(26224982-26225081)
chr7 (241-300)||(26205419-26205478)
chr7 (184-232)||(3234306-3234354)
[»] scaffold0576 (1 HSPs)
scaffold0576 (204-301)||(6698-6796)
[»] scaffold0007 (1 HSPs)
scaffold0007 (184-232)||(8724-8772)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 9354693 - 9354315
Alignment:
Q  1 catctttagcaactatattaagaacaacaccgcaataaaaggcggacattgacaagtggactatttgactggtactattaggtttcaataaaaggcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9354693 catctttagcaactatattaagaacaacaccgcaataaaaggcggacattgacaagtggactatttgactggtactattaggtttcaataaaaggcctat 9354594  T
Q  101 ttgaaattgcatctgatgcattattgttgctgtcctgcattatcgatcaacctggctaggggatgactaggaagtggtggtggcactacaacatgattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9354593 ttgaaattgcatctgatgcattattgttgctgtcctgcattatcgatcaacctggctaggggatgactaggaagtggtggtggcactacaacatgattga 9354494  T
Q  201 gatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaa 299  Q
    |||||||||||||||||||||||||||| ||||        |||||||||||||||||| |||||||||||||||| | |||||||||   | |||||||    
T  9354493 gatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgttactaa 9354394  T
Q  300 aaagctacaggattcagtaacaaccatggtgagatatggtgggtgcagttccgggagggtaggttagttagggactggc 378  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9354393 aaagctacaggattcagtaacaaccatggtgagatatggtggatgcagttccgggagggaaggttagttagggactggc 9354315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 9333856 - 9333518
Alignment:
Q  1 catctttagcaactatattaagaacaacaccgcaataaaaggcggacattgacaagtggactatttgactg--gtactattaggtttcaataaaaggcct 98  Q
    |||||||| |||| ||||||| | ||||||| | ||||||||  ||||||||||||||||||  | |||||  |||||||||||||| ||     |||||    
T  9333856 catctttaccaacaatattaaaagcaacaccacgataaaaggaagacattgacaagtggact--tcgactgttgtactattaggttttaa-----ggcct 9333764  T
Q  99 atttgaaattgcatctgatgcattattgttgctgtcctgcattatcgatcaacctggctaggggatgactaggaagtggtggtggcactacaacatgatt 198  Q
    |||||||||| ||| |||| ||| ||||||| ||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9333763 atttgaaatttcatttgatacataattgttgttgtccggcattatc----aacctggctaggggatgactaggaagtggtggtggcactacaacatgatt 9333668  T
Q  199 gagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttact 297  Q
    ||||||| ||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||| | ||||||||  | | |||||    
T  9333667 gagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagtcgatgttact 9333568  T
Q  298 aaaaagctacaggattcagtaacaaccatggtgagatatggtgggtgcag 347  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9333567 aaaaagctacacaattcagtaacaaccatggtgagatatggtgggtgcag 9333518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 9307293 - 9307113
Alignment:
Q  1 catctttagcaactatattaagaacaacaccgcaataaaaggcggacattgacaagtggactatttgactg--gtactattaggtttcaataaaaggcct 98  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||| ||||||||||||  ||||||||||||||||||||||| |||    
T  9307293 catctttagcaacaatattaagagcaacaccacaataaaaggcggacatagacatgtgaactatttgactgttgtactattaggtttcaataaaagtcct 9307194  T
Q  99 atttgaaattgcatctgatgcattattgttgctgtcctgcattatcgatcaacctggctaggggatgactaggaagtggtggtgg 183  Q
    |||| | ||||||| |||||||  |||||| ||  ||||||||    ||||||||| ||||||||||||  ||||| ||||||||    
T  9307193 atttcacattgcatttgatgcacaattgtttcttccctgcatt----atcaacctgactaggggatgaccgggaaggggtggtgg 9307113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 18191971 - 18191886
Alignment:
Q  183 gcactacaacatgattgagatttagtaacaattgaaaattgtaactaaa-tcnnnnnnntgttactaattaaatttagtaacattt 267  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||    
T  18191971 gcactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 17037540 - 17037625
Alignment:
Q  202 atttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaag 286  Q
    ||||||||||| |||||||| |||||||||||        ||||||||||||||||||||||||||||| ||||| | ||||||||    
T  17037540 atttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaag 17037625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 42076046 - 42076092
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaa 230  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||    
T  42076046 cactacaacataattgagatctagtaacaattgaaaattgttactaa 42076092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 37233070 - 37233131
Alignment:
Q  242 gttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaaag 303  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||   || |||||||||||    
T  37233070 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 37233131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 10869417 - 10869508
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnnt-gttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||| |||||||| |||  |||||| ||||||||| |||||||       | |||||||||||||||||||||||||||| |||||    
T  10869417 cactacaacataattgagatctagatacaattaaaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaatt 10869508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 42076084 - 42076118
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||||||||||||||||||||| |||||    
T  42076084 tgttactaattaaatttagtaacatttgaacaatt 42076118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 12004630 - 12004582
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||||||||||    
T  12004630 cactacaacataattgaaatttagtaacaattg-aaattctaactaaatc 12004582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 30655297 - 30655248
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    |||||||||||   ||||||||||||||| || |||||||||||||||||    
T  30655297 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaatc 30655248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 30786246 - 30786295
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    ||||||||||| ||| |||| |||||||| ||||||||||||||| ||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatc 30786295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 16457452 - 16457330
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| | ||||    
T  16457452 cactacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 16457353  T
Q  283 aaagctggttttactaaaaagct 305  Q
    |||||| || |||||||||||||    
T  16457352 aaagctcgtgttactaaaaagct 16457330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 27259566 - 27259474
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||| ||||||||||||||||||||||||| | | ||||||||        ||||||||||||||||||||||||||||| |||||    
T  27259566 cactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 5498457 - 5498559
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||||        ||||||||||||||||||||||| | ||| ||||| | ||||    
T  5498457 cactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggt 5498556  T
Q  283 aaa 285  Q
    |||    
T  5498557 aaa 5498559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 9633563 - 9633459
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    ||||||||||| ||||||||||||||||| ||||||| | | ||||||||        |||||||||||||||||||| |||||| | ||||| | ||||    
T  9633563 cactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggt 9633464  T
Q  283 aaagc 287  Q
    |||||    
T  9633463 aaagc 9633459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 26707896 - 26707941
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaattatcaggtaaag 286  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||    
T  26707896 tgttactaattaaatttagtaacatttgaacaattgttaggtaaag 26707941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 1654575 - 1654647
Alignment:
Q  204 ttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||| |||| |||| |||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaatt 1654647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 36035329 - 36035390
Alignment:
Q  244 tactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaaagct 305  Q
    ||||||||||||||||||||| |||  ||||| | |||||||||| || |||||||| ||||    
T  36035329 tactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagct 36035390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 24993328 - 24993376
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaat 232  Q
    |||||||||||   ||||||||||||||| || ||||||||||||||||    
T  24993328 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaat 24993376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 29553608 - 29553730
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||| ||||||||||||||| | || |    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagtt 29553707  T
Q  283 aaagctggttttactaaaaagct 305  Q
    |||||  || |||||||||||||    
T  29553708 aaagcgcgtgttactaaaaagct 29553730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 6403571 - 6403694
Alignment:
Q  183 gcactacaacatgattgagatttagtaacaattgaaaattgtaactaaa-tcnnnnnnntgttactaattaaatttagtaacatttgagcaattatcagg 281  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| |        ||||||||||||||||||||||||||||||||||| | |||    
T  6403571 gcactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttagg 6403670  T
Q  282 taaagctggttttactaaaaagct 305  Q
    ||||||  || ||| |||||||||    
T  6403671 taaagcccgtgttattaaaaagct 6403694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 31347328 - 31347420
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaatt 275  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||        || |||||||||||||||||||||||||| |||||    
T  31347328 cactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaatt 31347420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 5000661 - 5000749
Alignment:
Q  187 tacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnnt-gttactaattaaatttagtaacatttgagcaat 274  Q
    |||||||| |||||||| |||| ||||||||||||||| |||| |||       | |||||||||||||||||||||||||||||||||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaat 5000749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 6801951 - 6801847
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    |||||||||||   ||||||||||||||| ||||||| | | ||||||||        |||||||||||||||||||||||| |||| ||||| | ||||    
T  6801951 cactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggt 6801852  T
Q  283 aaagc 287  Q
    |||||    
T  6801851 aaagc 6801847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 19371376 - 19371341
Alignment:
Q  198 tgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    |||||||||||||||||| |||||||||||||||||    
T  19371376 tgagatttagtaacaattcaaaattgtaactaaatc 19371341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 19341542 - 19341493
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    |||||||||||   | |||||||||||||||| |||||||||||||||||    
T  19341542 cactacaacatatataagatttagtaacaattcaaaattgtaactaaatc 19341493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 7292812 - 7292885
Alignment:
Q  183 gcactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnntgttactaattaaatt 256  Q
    |||||||||||| ||||| ||||| ||||| ||||||||||| ||| ||||       ||||||||||||||||    
T  7292812 gcactacaacataattgacatttaataacacttgaaaattgttactgaatcatgaaaatgttactaattaaatt 7292885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 29345470 - 29345514
Alignment:
Q  243 ttactaattaaatttagtaacatttgagcaattatcaggtaaagc 287  Q
    ||||||||||||||||||||| ||||| ||||| | |||||||||    
T  29345470 ttactaattaaatttagtaacctttgaacaattgttaggtaaagc 29345514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 24479131 - 24479253
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    ||||| ||||| |||||||| |||||||| ||||||||| | ||||||||        ||||||||||||||||||||||||||||| ||||| | ||||    
T  24479131 cactataacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggt 24479230  T
Q  283 aaagctggttttactaaaaagct 305  Q
    |||||| || |||||||| ||||    
T  24479231 aaagctcgtgttactaaagagct 24479253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 44920955 - 44921053
Alignment:
Q  202 atttagtaacaattgaaaattgtaactaaatcnnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    ||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||  | | ||||| | |||||||||| || ||||||||    
T  44920955 atttagtaacacttgaaaattgtaactaaatcaaaaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaa 44921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 11017494 - 11017558
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaaagct 305  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||   || |||||||||||||    
T  11017494 tgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaagct 11017558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 15513664 - 15513766
Alignment:
Q  202 atttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    |||||||||||||| |||||||||| ||||||        |||||||| |||||||| |||||| |||| ||||| | |||||||||| || ||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaa 15513763  T
Q  301 aag 303  Q
    |||    
T  15513764 aag 15513766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 32265917 - 32265965
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaat 232  Q
    |||||||||||   ||||||||||||||| || ||||||||||||||||    
T  32265917 cactacaacatatatgagatttagtaacagttcaaaattgtaactaaat 32265965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 29668038 - 29667931
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnn---tgttactaattaaatttagtaacatttgagcaattatcag 280  Q
    ||||||||||| |||||||| | ||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||| ||||| | ||    
T  29668038 cactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 29667939  T
Q  281 gtaaagct 288  Q
    ||||||||    
T  29667938 gtaaagct 29667931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 16734804 - 16734901
Alignment:
Q  204 ttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    ||||||||| ||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||| | |||||||||  || ||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaa 16734901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 7913523 - 7913474
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    ||||||||||||  ||||||||||||||| || |||||||||||||||||    
T  7913523 cactacaacatgtatgagatttagtaacacttcaaaattgtaactaaatc 7913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 15361714 - 15361812
Alignment:
Q  204 ttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaa 301  Q
    ||||||||| || |||||||||||||||||        ||||||||||||||||||| |||| |||| ||||| | ||||||||| ||| |||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaa 15361812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 23264619 - 23264515
Alignment:
Q  184 cactacaacatgattgagatttagtaacaat--tgaaaattgtaactaaatcnnnnnnnt-gttactaattaaatttagtaacatttgagcaattatcag 280  Q
    ||||||||||| |||||||| |||||| |||  |||||||||| ||||||||       | ||||||||||||||||||||||||| || ||||| | ||    
T  23264619 cactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttag 23264520  T
Q  281 gtaaa 285  Q
    |||||    
T  23264519 gtaaa 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 6673737 - 6673690
Alignment:
Q  186 ctacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  6673737 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatc 6673690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 1942547 - 1942597
Alignment:
Q  183 gcactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    |||||||||||| ||| |||||| |||||| |||| |||||||||||||||    
T  1942547 gcactacaacataattaagatttggtaacatttgataattgtaactaaatc 1942597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 2941043 - 2941103
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaa 301  Q
    ||||||||||||  ||||||||||||||||||| | | |||||||| | || |||||||||    
T  2941043 tgttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttactaaaa 2941103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 24559116 - 24559030
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttga 269  Q
    ||||| ||||| |||||||||||||||||||| |||| ||||||||||||        |||||||||||||||||||||||||||||    
T  24559116 cactagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttga 24559030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 37751110 - 37751019
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnntgttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||| ||||| ||  |||||||  |||||||||| ||||||||       |||||||||||||| | ||||||||||| ||||||    
T  37751110 cactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaaaaaaatgttactaattaaaatcagtaacatttgcgcaatt 37751019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 48464077 - 48464111
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaatt 275  Q
    ||||||||||||||||||||||||||||| |||||    
T  48464077 tgttactaattaaatttagtaacatttgaacaatt 48464111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 12189930 - 12190048
Alignment:
Q  183 gcactacaacatgattgagatttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcagg 281  Q
    |||||||||||| ||||||| |||| ||||||| |||| ||||||||||||        | ||||||||||||||||||||||||||| ||||| | |||    
T  12189930 gcactacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttagg 12190029  T
Q  282 taaagctggttttactaaa 300  Q
    ||||||  || ||||||||    
T  12190030 taaagcccgtgttactaaa 12190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 5911785 - 5911681
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    |||||||||||||||  ||| |||||||| ||||||||| ||||||||||        ||||||| |||||||||||||||| |||| ||||| | ||||    
T  5911785 cactacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggt 5911686  T
Q  283 aaagc 287  Q
    |||||    
T  5911685 aaagc 5911681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 28636882 - 28636985
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggt 282  Q
    ||||||||||| ||| |||| |||||||| || |||||||||||||||||        ||||||||||| |||||||||||||||||  |||| | ||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggt 28636981  T
Q  283 aaag 286  Q
    ||||    
T  28636982 aaag 28636985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 3399659 - 3399703
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaattatcaggtaaa 285  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||    
T  3399659 tgttactaattaaatttagtaacatttgaacaattgttaggtaaa 3399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 20427840 - 20427805
Alignment:
Q  198 tgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    |||||||||||||||||| |||||||||||||||||    
T  20427840 tgagatttagtaacaattcaaaattgtaactaaatc 20427805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 17112904 - 17112953
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaatc 233  Q
    ||||||||||| ||||| || |||||| ||||||||||||| ||||||||    
T  17112904 cactacaacataattgaaatctagtaataattgaaaattgttactaaatc 17112953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 10022121 - 10022220
Alignment:
Q  202 atttagtaacaattgaaaattgtaactaaatc-nnnnnnntgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||  ||| ||||| | |||||||||| || ||||||||    
T  10022121 atttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaa 10022220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 26225081 - 26224982
Alignment:
Q  202 atttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    ||||| ||||| ||||||||||||||||||||        || ||||||||||||||||||||| |||| ||||||| ||||||||| ||| ||||||||    
T  26225081 atttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaa 26224982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 26205478 - 26205419
Alignment:
Q  241 tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaa 300  Q
    |||||||||||||||||||||||| ||||  ||||   ||||||||||||| ||||||||    
T  26205478 tgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaa 26205419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 3234306 - 3234354
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaat 232  Q
    ||||||| ||| ||| ||||||||||||| ||||||| |||||||||||    
T  3234306 cactacagcataattaagatttagtaacagttgaaaaatgtaactaaat 3234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 6698 - 6796
Alignment:
Q  204 ttagtaacaattgaaaattgtaactaaatcnnnnnnn-tgttactaattaaatttagtaacatttgagcaattatcaggtaaagctggttttactaaaa 301  Q
    ||||||||| || |||||||||||||||||        ||||||||||||||||||| |||| |||| ||||| | ||||||||| ||| |||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaa 6796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 8724 - 8772
Alignment:
Q  184 cactacaacatgattgagatttagtaacaattgaaaattgtaactaaat 232  Q
    ||||||||||| ||| ||||||||||||| ||||||| |||||||||||    
T  8724 cactacaacataattaagatttagtaacagttgaaaaatgtaactaaat 8772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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