View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14527_low_4 (Length: 371)
Name: NF14527_low_4
Description: NF14527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14527_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 28094521 - 28094875
Alignment:
| Q |
1 |
ttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094521 |
ttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaac |
28094620 |
T |
|
| Q |
101 |
gcatataactctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094621 |
gcatataactctttttggtagcacctctgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttg |
28094720 |
T |
|
| Q |
201 |
tcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggattatgatttcggatacggtttctgataagaacttttttatgtcttttatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094721 |
tcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggattatgatttcggatacggtttctgataagaacttttttatgtcttttatga |
28094820 |
T |
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| Q |
301 |
caacgtctacgctgtacgtgaggagaattccgtgacatactcttcgatcctcttg |
355 |
Q |
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| T |
28094821 |
caacgtctacgctgtacgtgaggagaattccgtgacatactcttcgatcctcttg |
28094875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 26156226 - 26155984
Alignment:
| Q |
11 |
atctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaacgcatataact |
110 |
Q |
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|||||| |||||||| || ||| | | | ||||||||||||| ||| |||| ||| || || |||| ||| || ||||||||||||||||||||||| |
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| T |
26156226 |
atctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcggcttccaaacgcatataacc |
26156127 |
T |
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| Q |
111 |
ctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgg |
210 |
Q |
| |
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|| || |||| || ||||| ||| || || ||||||||| ||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| | |
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| T |
26156126 |
ctcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcag |
26156027 |
T |
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| Q |
211 |
gtggatcattgtgaccaaactcagttctaacctcgaggattat |
253 |
Q |
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||||||||| |||||||| || ||||||||||| || ||||| |
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| T |
26156026 |
gtggatcatcatgaccaaattctgttctaacctcaagaattat |
26155984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 26169524 - 26169282
Alignment:
| Q |
11 |
atctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaacgcatataact |
110 |
Q |
| |
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|||||| |||||||| || ||| | | | ||||||||||||| ||| |||| ||| || || |||| ||| || ||||||||||||||||||||||| |
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| T |
26169524 |
atctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcggcttccaaacgcatataacc |
26169425 |
T |
|
| Q |
111 |
ctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgg |
210 |
Q |
| |
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|| || |||| || ||||| ||| || || ||||||||| ||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| | |
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| T |
26169424 |
ctcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcag |
26169325 |
T |
|
| Q |
211 |
gtggatcattgtgaccaaactcagttctaacctcgaggattat |
253 |
Q |
| |
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||||||||| |||||||| || ||||||||||| || ||||| |
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| T |
26169324 |
gtggatcatcatgaccaaattctgttctaacctcaagaattat |
26169282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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