View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14527_low_5 (Length: 284)
Name: NF14527_low_5
Description: NF14527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14527_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 45341873 - 45342084
Alignment:
| Q |
16 |
accttcttcctcaaaccccaacaaatacgacaaagacatcaacgttccagtacgagccccaccaccaccaccaaatcccaatcctgtagtaacggtacgc |
115 |
Q |
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| T |
45341873 |
accttcttcctcaaaccccaacaaatacgacaaagacatcaacgttccagtacgagccccaccaccaccaccaaatcccaatcctgtaataacggtacgc |
45341972 |
T |
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| Q |
116 |
ataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatagcataacaacaccactacactgaaacaa |
215 |
Q |
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| T |
45341973 |
ataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatagcataacaacaccactacactgaaacaa |
45342072 |
T |
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| Q |
216 |
cgattcaatcat |
227 |
Q |
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|||||||||||| |
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| T |
45342073 |
cgattcaatcat |
45342084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 45342116 - 45342169
Alignment:
| Q |
222 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttggaaagagaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342116 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttggaaagagaa |
45342169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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