View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14528_high_2 (Length: 1119)

Name: NF14528_high_2
Description: NF14528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14528_high_2
NF14528_high_2
[»] chr8 (2 HSPs)
chr8 (785-958)||(12933811-12933984)
chr8 (808-845)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (785-958)||(28608621-28608794)
chr4 (785-935)||(14177081-14177231)
chr4 (793-846)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (778-815)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (778-815)||(796698-796735)
chr6 (778-815)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (778-815)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 785 - 958
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  785 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 883  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  884 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 958  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 808 - 845
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  808 catggagatttggaagaggagatttatatggagcaacc 845  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 785 - 958
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  785 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 883  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  884 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 958  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 785 - 935
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  785 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 883  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  884 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 935  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 793 - 846
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  793 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 846  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 778 - 815
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  778 gagcagttggatgtgaaaactgcatttcttcatggaga 815  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 778 - 815
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  778 gagcagttggatgtgaaaactgcatttcttcatggaga 815  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 778 - 815
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  778 gagcagttggatgtgaaaactgcatttcttcatggaga 815  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 778 - 815
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  778 gagcagttggatgtgaaaactgcatttcttcatggaga 815  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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