View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14528_high_5 (Length: 647)
Name: NF14528_high_5
Description: NF14528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14528_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 607
Target Start/End: Original strand, 12933811 - 12933955
Alignment:
| Q |
463 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
561 |
Q |
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| T |
12933811 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
12933909 |
T |
|
| Q |
562 |
gcaaattgaataagagtctttatggattgaagcaggcaccaagaca |
607 |
Q |
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| T |
12933910 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagaca |
12933955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 523
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
486 |
catggagatttggaagaggagatttatatggagcaacc |
523 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 607
Target Start/End: Original strand, 14177081 - 14177225
Alignment:
| Q |
463 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
561 |
Q |
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| T |
14177081 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
14177179 |
T |
|
| Q |
562 |
gcaaattgaataagagtctttatggattgaagcaggcaccaagaca |
607 |
Q |
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| T |
14177180 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagaca |
14177225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 607
Target Start/End: Complemental strand, 28608794 - 28608650
Alignment:
| Q |
463 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
561 |
Q |
| |
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||||||| || ||||||||||||||||||||||| || || ||||| || |||| ||||||||||||||| ||| || || ||||| | ||| |||| | |
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| T |
28608794 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt |
28608696 |
T |
|
| Q |
562 |
gcaaattgaataagagtctttatggattgaagcaggcaccaagaca |
607 |
Q |
| |
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| T |
28608695 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagaca |
28608650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
| Q |
471 |
aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
524 |
Q |
| |
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|||| ||||||||| ||||||||||| ||| |||||| |||||||||||||||| |
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| T |
20706182 |
aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
| Q |
456 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
493 |
Q |
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| T |
6692086 |
gagcagttagatgtgaagactgcatttcttcatggaga |
6692123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
| Q |
456 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
493 |
Q |
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| T |
796735 |
gagcagttagatgtgaagactgcatttcttcatggaga |
796698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
| Q |
456 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
493 |
Q |
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|||||||| |||||||| |||||||||||||||||||| |
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| T |
8273092 |
gagcagttagatgtgaagactgcatttcttcatggaga |
8273129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 493
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
| Q |
456 |
gagcagttggatgtgaaaactgcatttcttcatggaga |
493 |
Q |
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| T |
19944036 |
gagcagttagatgtgaagactgcatttcttcatggaga |
19944073 |
T |
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