View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14529_high_4 (Length: 245)
Name: NF14529_high_4
Description: NF14529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14529_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10870444 - 10870661
Alignment:
| Q |
4 |
attattctgttgttggtcctataattttgtaaaagttaattacaaattctagacttataaatgacttcatttttgaaataaatcattgtatacatacaaa |
103 |
Q |
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| T |
10870444 |
attattctgttgttgatcctataattttgtaaaagttaattacaaattctagacttataaatgacttcatttttgaaataaatcattacataca---aaa |
10870540 |
T |
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| Q |
104 |
aaagtacacatgagtggaaggcaaccgagcagcaagctgcgctgctaggccttttttgtaggcaaaactaatctttgtttttaaccggtggtctaatcag |
203 |
Q |
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| T |
10870541 |
aaaatacacatgagtggaaggcaaccgagcagcaagctgcgctgctaggccttttttgtaggcaaaactaatctttgtttttaaccggtggtctaatgag |
10870640 |
T |
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| Q |
204 |
taatggtattggtatgtggat |
224 |
Q |
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| T |
10870641 |
taatggtattggtatgtggat |
10870661 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 21454616 - 21454651
Alignment:
| Q |
92 |
tatacatacaaaaaagtacacatgagtggaaggcaa |
127 |
Q |
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| T |
21454616 |
tatacatacaaaaaattacacatgagtggaaggcaa |
21454651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 44420563 - 44420630
Alignment:
| Q |
92 |
tatacatacaaaaaagtacacatgagtggaaggcaaccgagcagcaagctgcgctgctaggccttttt |
159 |
Q |
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| T |
44420563 |
tatatatacaaaaaattacacgtgggtggaaggcaagcgagcaacaaactgcgccgctaagccttttt |
44420630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 30602356 - 30602424
Alignment:
| Q |
108 |
tacacatgagtggaaggcaaccgagcagcaagctgcgctgctaggccttttttgtaggcaaaactaatc |
176 |
Q |
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||||||||| | ||||||| || ||| |||||||||||||||||||||||| | |||||||| |||| |
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| T |
30602356 |
tacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatc |
30602424 |
T |
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