View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14529_low_1 (Length: 597)

Name: NF14529_low_1
Description: NF14529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14529_low_1
NF14529_low_1
[»] chr8 (1 HSPs)
chr8 (25-579)||(30054749-30055290)
[»] chr3 (11 HSPs)
chr3 (25-120)||(8400489-8400584)
chr3 (24-139)||(5367622-5367737)
chr3 (29-139)||(5362411-5362521)
chr3 (29-133)||(5374181-5374285)
chr3 (317-372)||(8400207-8400262)
chr3 (29-139)||(5355979-5356089)
chr3 (317-371)||(5368748-5368802)
chr3 (317-371)||(5374505-5374559)
chr3 (326-372)||(5367951-5367997)
chr3 (326-372)||(5362735-5362781)
chr3 (518-572)||(45906383-45906437)
[»] chr7 (1 HSPs)
chr7 (320-364)||(30597955-30597999)


Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 25 - 579
Target Start/End: Complemental strand, 30055290 - 30054749
Alignment:
Q  25 attatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaaccc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055290 attatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaaccc 30055191  T
Q  125 ttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccactccactccacactct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055190 ttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccactccactccacactct 30055091  T
Q  225 cgagtttcttgacaaagaggtttccgtggaaccccgaatactgaatagtatcgtagaatacgctgtttcacatagtgtccaggtattacgaattccatct 324  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    || | |  |||         | ||||||||    
T  30055090 cgagtttcttgacaaagaggttttcgtggaaccccgaatactgaatagtatcgtagaatacgctgt----caaattcacca---------acttccatct 30055004  T
Q  325 tgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattggagtatttaacaaagtatacttccccaactctcttaatttgc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30055003 tgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattgtagtatttaacaaagtatacttccccaactctcttaatttgc 30054904  T
Q  425 ctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttatacttgtggaggatgca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  30054903 ctgctttaaccaccttggctgtaaggttcttccactttcgcgctggcgatgatggttgaatactttggtcattgaaagttttagacttgtggaggatgta 30054804  T
Q  525 gaaactctttgtatatcaagtgacacacttgtcaatttgactatgtatggatatg 579  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  30054803 gaaactctttgtatatcaagtgacacacttgtcaatttgactatatatgggtatg 30054749  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 8400584 - 8400489
Alignment:
Q  25 attatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttcca 120  Q
    ||||||||| |||||||||| |||||||| || ||||||| ||||||||||||  |||||||||||||||||| | |||||||||| |||||||||    
T  8400584 attatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgtactctcaacaagatggatccatctcacaaaacatcttcca 8400489  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 5367622 - 5367737
Alignment:
Q  24 gattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacc 123  Q
    |||| ||||| |||||||||| || ||  |||| ||| ||||||||||||||| ||||||||| || ||||||||  ||||| |||| ||||| ||||||    
T  5367622 gattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatctaccaacc 5367721  T
Q  124 cttagattaacttcca 139  Q
    |||||||||| |||||    
T  5367722 cttagattaagttcca 5367737  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 5362411 - 5362521
Alignment:
Q  29 tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag 128  Q
    ||||| |||||||||| || ||| |||| ||||||||||||||||||||||||||||| | | |||||||  ||||  |||| ||| ||||||| |||||    
T  5362411 tccatcacattctctccttattggacaccaaagaagcttttcaaacttgcatactctccaaacgatggaagaatctaccaaaccatattccaactcttag 5362510  T
Q  129 attaacttcca 139  Q
    ||||| |||||    
T  5362511 attaagttcca 5362521  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 5374181 - 5374285
Alignment:
Q  29 tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag 128  Q
    ||||| |||||||||| || ||  |||| ||| ||||||||||||||| ||||||||| || ||||||||  ||||| |||| ||| |||||||||||||    
T  5374181 tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacccttag 5374280  T
Q  129 attaa 133  Q
    |||||    
T  5374281 attaa 5374285  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 8400262 - 8400207
Alignment:
Q  317 ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcac 372  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  8400262 ttccatctttcttattttcatctcaaactttaacttctcttcacctttctcttcac 8400207  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 5355979 - 5356089
Alignment:
Q  29 tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag 128  Q
    ||||| |||||||||| || ||  |||| ||| ||||||||||||||| ||||||||| || ||||||||  ||||| |||| |||||  ||||||||||    
T  5355979 tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaacatctctcaacccttag 5356078  T
Q  129 attaacttcca 139  Q
    ||||| |||||    
T  5356079 attaagttcca 5356089  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 5368748 - 5368802
Alignment:
Q  317 ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca 371  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5368748 ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca 5368802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 5374505 - 5374559
Alignment:
Q  317 ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca 371  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5374505 ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca 5374559  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 5367951 - 5367997
Alignment:
Q  326 gcttattttcatctcaaactttaacttctcttgacctttctattcac 372  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  5367951 gcttattttcatctcaaaccttaacgtctcttgacctttctattcac 5367997  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 5362735 - 5362781
Alignment:
Q  326 gcttattttcatctcaaactttaacttctcttgacctttctattcac 372  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  5362735 gcttattttcatctcaaaccttaacgtctcttgacctttccattcac 5362781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 45906437 - 45906383
Alignment:
Q  518 ggatgcagaaactctttgtatatcaagtgacacacttgtcaatttgactatgtat 572  Q
    ||||||| |||| ||||| ||||||||||  |||||||||||||| |||||||||    
T  45906437 ggatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtat 45906383  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 30597999 - 30597955
Alignment:
Q  320 catcttgcttattttcatctcaaactttaacttctcttgaccttt 364  Q
    |||||||||| ||||||| ||| |||||||| |||||||||||||    
T  30597999 catcttgctttttttcatgtcacactttaacctctcttgaccttt 30597955  T

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