View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14529_low_3 (Length: 395)
Name: NF14529_low_3
Description: NF14529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14529_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 46934631 - 46935003
Alignment:
| Q |
1 |
aagatatggacatgaatgataaattcggcattaccttgcaaaaggcacaaccccttcgagttgttcctgtccgaataagcaaataaagtgtcattctttt |
100 |
Q |
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| T |
46934631 |
aagatatggacatgaatgataaattcggcattaccttgcaaaaggcacaaccccttcgagttgttcctgtccgaataagcaaataaagtgtcattctttt |
46934730 |
T |
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| Q |
101 |
gtatgtctaatacattagatagtcctttttctttttcctctcaagatttattaaattgtttatcacttaatttccttgttttcaatgaggtgtaataatt |
200 |
Q |
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| T |
46934731 |
gcatgtctaatacattagatagtcctttttctttttcctctcaagatttattaaattgtttatcacttaatttccttgttttcaatgaggtgtaataatt |
46934830 |
T |
|
| Q |
201 |
gagtcaaaataattgtattcatgtgacaaatgttactgctataaacttcttcatacagtacaacattgtcgataaacataaataaaagttatattcgtta |
300 |
Q |
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| T |
46934831 |
gagtcaaaataattgtattcatgtgacaaatgttaccgctataaacttcttcatacagtacaacattgtcgataaacataaataaaagttatattcgtta |
46934930 |
T |
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| Q |
301 |
tcagtnnnnnnntgttattgtaatcatgcatgataaggaatcctgttgtaatatttaaaattaagaagtcctt |
373 |
Q |
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| T |
46934931 |
tcagtaaaaaaatgttattgtaatcatgcatgataaggaatcctgttgtaatatttaaaattaagaagtcctt |
46935003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11106311 - 11106244
Alignment:
| Q |
1 |
aagatatggacatgaatgataaattcggcattaccttgcaaaaggcacaaccccttcgagttgttcct |
68 |
Q |
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|||||||| ||||| |||||||||| || ||||| | |||||||| |||||||||||| |||||||| |
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| T |
11106311 |
aagatatgaacatggatgataaatttgggattactctacaaaaggctcaaccccttcgaattgttcct |
11106244 |
T |
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