View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14529_low_4 (Length: 391)
Name: NF14529_low_4
Description: NF14529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14529_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 187 - 364
Target Start/End: Complemental strand, 31868904 - 31868734
Alignment:
| Q |
187 |
cggttgcagttcaccttaggataaagaataaaggggagttagagtagttaggactatatagagtagttagcttgttagagggatatgatttataaacact |
286 |
Q |
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| T |
31868904 |
cggttgcagttcatcttaggataaagaataaaggggagttagagtagttaggactataaagagtagttagcttgttagagggatatgatttataa----- |
31868810 |
T |
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| Q |
287 |
tacaggagtaataaacaattagtcggaagactttaagcccacaaagtgcttatgaatgtaaacaatttggatcctttg |
364 |
Q |
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| T |
31868809 |
-acaggagtaataaacaattagtcggaagac-ttaagcccacaaagtgcttatgaatgtaaacaatttggatcctttg |
31868734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 31869072 - 31868978
Alignment:
| Q |
18 |
ctttgaacatctattttttccatccacaaattcgaatctgagatattaaggggaatgaagcttcttgtcacttggatcaacaagtgttggtagcg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31869072 |
ctttgaacatctattttttccatccacaaattcgaatctgagatattaaggggaatgaagcttcttgtcacttggatcaacaagtgttggtagcg |
31868978 |
T |
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