View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1452_low_2 (Length: 567)
Name: NF1452_low_2
Description: NF1452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1452_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 30 - 553
Target Start/End: Complemental strand, 4175203 - 4174682
Alignment:
| Q |
30 |
tcattgtgatttatggtgtgtttggtgttgaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgtc |
129 |
Q |
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| T |
4175203 |
tcattgtgatttatggtgtgtttggtgttgaaatttactcattcaaccgtgattttatt---tttaccgaacttagttgaaaaaacatttggcttgtgtc |
4175107 |
T |
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| Q |
130 |
aaatgtgtttaaacacgattctaatnnnnnnnn-tatataaagctaagcacatacatgattggttatgactctaaaaacatagtgcagaaaaggatctta |
228 |
Q |
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| T |
4175106 |
aaatgtgtttaaacacgattctaataaaaatatatatatgaagctaagcacatatatgattggttatgactctaaaaacatagtgcagaaaaggatctta |
4175007 |
T |
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| Q |
229 |
caaacataatggccaatcatgaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatcc |
328 |
Q |
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| T |
4175006 |
caaacataatggccaatcatgaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatcc |
4174907 |
T |
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| Q |
329 |
ccgatagctaagtggatgggattttctgagccaaagtacgttggttattgtgctttccgtggacttgcctcctattcagatggacaaccttttgagccac |
428 |
Q |
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| T |
4174906 |
ccgatagctaagtggatgggattttctgagccaaattacgttggttattgtgctttccgtggacttgcctcctattcagatggacaaccttttgagctac |
4174807 |
T |
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| Q |
429 |
gggtgaattacatctttggaaaagggttacgtgcagcatatgttcctgtttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccagg |
528 |
Q |
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| T |
4174806 |
gggtgaattacatctatggaaaagggttacgtgcaggatatgttcctgtttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccagg |
4174707 |
T |
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| Q |
529 |
ttcttacttctaactacatgcatat |
553 |
Q |
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| T |
4174706 |
ttcttacttctaactacatgcatat |
4174682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 4171234 - 4170703
Alignment:
| Q |
17 |
ttgcaaaggttagtcattgtgatttatggtgtgtttggtgttgaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagca |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | || | |||| |||||| ||| || |
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| T |
4171234 |
ttgcaaaggttagtcattgtaatttatggtgtgtttggtgttgaaagttacttattcaaccatgattttattagtatttacaaactcagttgacaaaaca |
4171135 |
T |
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| Q |
117 |
tttggcttttgt--caaatgtgtttaaacacgattctaatnnnnnnnnta------tataaagctaagcacatacatgattggttatgactctaaaaaca |
208 |
Q |
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| T |
4171134 |
tttggtttctgttccaactgtgtttaaacatgattctgatgaaaaaaaaaacatactattaagctaaccacat----gattggttgtgaccatgaaaaca |
4171039 |
T |
|
| Q |
209 |
tagtgcagaaaaggatcttacaaacataa-------tggccaatcatgaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagatt |
301 |
Q |
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|| |||| |||||||||||||| |||||| | |||||| ||||||| | |||||||||| | |||||||||||||| ||||| | |||||||| |
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| T |
4171038 |
tactgcacaaaaggatcttacagacataaacattaatagccaattctgaagctttagtcctaaaaagtcttaacaaattgattccatgtataaacagatt |
4170939 |
T |
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| Q |
302 |
gtaatagggtgcgacggcattcgatccccgatagctaagtggatgggattttctgagccaaagtacgttggttattgtgctttccgtggacttgcctcct |
401 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
4170938 |
gtaatagggtgcgacggaattcgatcaccgatagctaagtggatgggattttctgagccaaagttcgttggtcattgtgctttccgtggacttgcctcct |
4170839 |
T |
|
| Q |
402 |
attcagatggacaaccttttgagccacgggtgaattacatctttggaaaagggttacgtgcagcatatgttcctgtttctcctaccaaagtgtattggtt |
501 |
Q |
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| T |
4170838 |
attcagacggacaaccttttcaaccacgggtgaattacatctatggaaaagggttacgcgcaggatatgttcctgtttctccaaccaaagtctattggtt |
4170739 |
T |
|
| Q |
502 |
tgtcaccttcaatagttcatctccaggttcttactt |
537 |
Q |
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| || |||||| |||||||||||||||| |||||| |
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| T |
4170738 |
tatctgcttcaacagttcatctccaggttgttactt |
4170703 |
T |
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