View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1452_low_4 (Length: 383)
Name: NF1452_low_4
Description: NF1452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1452_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 46161720 - 46162084
Alignment:
| Q |
1 |
cccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattcgttacgaaagatttata |
100 |
Q |
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| T |
46161720 |
cccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattcgtt-cgaaagatttata |
46161818 |
T |
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| Q |
101 |
caagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatataatcatttattttcttgtcaaact |
200 |
Q |
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| T |
46161819 |
caagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatat---catttattttcttgtcaaact |
46161915 |
T |
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| Q |
201 |
ttttctcttaacaataaacatcttcccagaaaaatatataattatcttcttcggctgtcaactggggtgggaacaaatggcgaagcctactttttgttca |
300 |
Q |
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| T |
46161916 |
ttttctcttaacaataaacatcttcccagaacaatatataattatcttcttcagctgtcaactggggtgggaacaaatggcgaagcctactttttgttca |
46162015 |
T |
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| Q |
301 |
----atatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatgaagctgacag |
365 |
Q |
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| T |
46162016 |
atatatatgggaacataactgcatgttgctttaatggagatgactagttcagtatgatgaagctgacag |
46162084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 46169121 - 46169285
Alignment:
| Q |
73 |
cagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccac |
172 |
Q |
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| T |
46169121 |
cagtgctatttgttacgaaagatctatacaagaaataaagagaagaatgcataataataagagat-ttgactaatcaaattctatgttacatgctgctac |
46169219 |
T |
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| Q |
173 |
atataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
240 |
Q |
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| T |
46169220 |
atataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 46245279 - 46245173
Alignment:
| Q |
259 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatgaag |
358 |
Q |
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| T |
46245279 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagttcagtatgatgaag |
46245180 |
T |
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| Q |
359 |
ctgacag |
365 |
Q |
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||||||| |
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| T |
46245179 |
ctgacag |
46245173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 46254967 - 46254862
Alignment:
| Q |
259 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatgaag |
358 |
Q |
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|||||||| |||||||| ||| |||||||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
46254967 |
caactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacatagctgcatgatgcttcaatggagatgactagttcagtacgatgaag |
46254868 |
T |
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| Q |
359 |
ctgaca |
364 |
Q |
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|||||| |
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| T |
46254867 |
ctgaca |
46254862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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