View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14530_high_1 (Length: 458)
Name: NF14530_high_1
Description: NF14530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14530_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 47128353 - 47127923
Alignment:
| Q |
16 |
acttgtctgaatttcgaccaagcacatctacattttctgcttatattttagttcagagtttacaattttaattaaaaaacttatccttgttatnnnnnnn |
115 |
Q |
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| T |
47128353 |
acttgtccgaatttcgaccaagtacatctacattttctgcttatattttagttcagagtttacaattttaattaaaaaacttatccttgttataaaaaaa |
47128254 |
T |
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| Q |
116 |
taatatgtttcaatgtttcttgtacatataggaatttcctcctgccagcaagctggacccaagtgtttatggagaccaaaacagttacatccaagcaaag |
215 |
Q |
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| T |
47128253 |
taatatgtttcaatgtttcttgtacatgtaggaatttcctcctgccagcaagctggacccaagtgtttatggagaccaaaacagttccatccaagcaaag |
47128154 |
T |
|
| Q |
216 |
cacatagaaaatagtttagatgggcttacaatagatgaggtactaatagagatcaaaattcacttattcattgactaaaagttgtatgaaaatgaagtca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128153 |
cacatagaaaatagtttagatgggcttacaatagatgaggtactaatagagatcaaaattcacttattcattgactaaaagttgtatgaaaatgaagtca |
47128054 |
T |
|
| Q |
316 |
aattcatgttgaatgttataaactctacatatatcgctaacaagaatcaaacttctttatgttgcaggctcttgaaagtgataagctctatatattagat |
415 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128053 |
aattcatgttgaatgttataatc------aatatcgctaacaagaatcaaacttctttatgttgcaggctcttgaaagtgataagctctatatattagat |
47127960 |
T |
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| Q |
416 |
catcatgatgctttgatgccatacctaagtagaataa |
452 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47127959 |
catcatgatgctttgatgccatacctaagtagaataa |
47127923 |
T |
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