View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14531_high_2 (Length: 367)
Name: NF14531_high_2
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 41236976 - 41237326
Alignment:
| Q |
1 |
agcaatatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagttagtttatacggtttgactcaaaataaactactccatcgtatcgtttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41236976 |
agcaatatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagttagtttatacggtttgactcaaaataaactactccatcgtat---ttta |
41237072 |
T |
|
| Q |
101 |
aggttatatacatatc-gagaaaactaaataattgtgtttctttcggtagaattatctgtcttttccgtataaata---cttaaa-gagtattattaaca |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
41237073 |
aggttatatacatatctgagaaaactaaataattgtgtttctttcggtagaattatctgtcttttccgtataaataatacttaaaagagtattattaaca |
41237172 |
T |
|
| Q |
196 |
aaagaataacacaaaactgacaagtaaaagtcacagagggagtactagaaaaccactctcctttaaaaatcttaccggttgtaattgttcggaaccgctc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41237173 |
aaagaataacacaaaactgacaagtaaaagtcacag--ggagtactagaaaaccactctcctttaaaaatcttaccggttgtaattgttcggaaccgctc |
41237270 |
T |
|
| Q |
296 |
ctgacctgcagtatcccaaacttggagcatgatcttttttccatccagctcaatgg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41237271 |
ctgacctgcagtatcccaaacttggagcatgatcttttttccatccagctcaatgg |
41237326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 23385393 - 23385472
Alignment:
| Q |
273 |
gttgtaattgttcggaaccgctcctgacctgcagtatcccaaacttggagcatgatcttttttccatccagctcaatggt |
352 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||| ||||||| ||||| ||| ||||| || |||||||| |
|
|
| T |
23385393 |
gttgtaattgtccggaaccgttcctgtcctgcagtatcccaaatttggagcttgatccgtttgccatcaagttcaatggt |
23385472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23385215 - 23385248
Alignment:
| Q |
1 |
agcaatatgcccatagcaccacgatagtaagctg |
34 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
23385215 |
agcaatatgcccatggcaccacgatagtaagctg |
23385248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University