View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14531_high_5 (Length: 271)
Name: NF14531_high_5
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 7459625 - 7459401
Alignment:
| Q |
30 |
agattatactccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtgattataccga |
129 |
Q |
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| T |
7459625 |
agattatactccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgtaatagatgattataccga |
7459526 |
T |
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| Q |
130 |
taaactaaagcaaatacaaaagaatgtatatgatttaattaataaggataataaataaactctcgtaagaattgagataagggtatgctcaaaagaaata |
229 |
Q |
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| T |
7459525 |
taatctaaagcaaatacaaaagaatgtatatgatttaattaataaggataataaatacactctcgtaagaattgagataagggtatgctcagaagaaata |
7459426 |
T |
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| Q |
230 |
acatgtcaaattcttaggaggaagt |
254 |
Q |
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| T |
7459425 |
acatgtcaaattcttaggaggaagt |
7459401 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 17336615 - 17336542
Alignment:
| Q |
39 |
tccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtg |
119 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
17336615 |
tccaaccaaagactaagttgtgaatca-------ccaagtattttacaccaacttacttatcaaaccaaatacaataggtg |
17336542 |
T |
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