View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14531_high_7 (Length: 266)
Name: NF14531_high_7
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 29456965 - 29457149
Alignment:
| Q |
10 |
agaagcaaaggtactgcataaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaacacccnnnnnnnatcatgtcttgaatacgtgctc |
109 |
Q |
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| T |
29456965 |
agaagcaaaggtactgcataaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaacaccctttttttatcatgtcttgaatacgtgctc |
29457064 |
T |
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| Q |
110 |
agactaaaaattatgatattttttctacaaggtatgttttatattgtaatatcataatgtggactattattccttttctgctgta |
194 |
Q |
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| T |
29457065 |
agactaaaaattatgatattttttctacaaggtatgttttatgttgtaatatcataatgtggactattattccttttctgctgta |
29457149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 29461783 - 29461839
Alignment:
| Q |
195 |
gactttgactgccattccttgtgcctaaggttgttttatagatccaatagaagaaat |
251 |
Q |
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| T |
29461783 |
gactttgactgccattccttgtgcctaaggttgttttatagatccaatagaagaaat |
29461839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 29449134 - 29449223
Alignment:
| Q |
125 |
atattttttctacaaggtatgttttatattgtaatatcataatgtggactattattccttttctgctgtagactttgactgccattcctt |
214 |
Q |
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| T |
29449134 |
atattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttatgctgtagactttgaatgccatccctt |
29449223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 29449062 - 29449109
Alignment:
| Q |
29 |
aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac |
76 |
Q |
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| T |
29449062 |
aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac |
29449109 |
T |
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