View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14531_low_1 (Length: 452)
Name: NF14531_low_1
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_low_1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 122 - 452
Target Start/End: Complemental strand, 34122230 - 34121891
Alignment:
| Q |
122 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttgtgcaactttgatttaaaaccttatgaatgaagttagttagc |
221 |
Q |
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| T |
34122230 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttctgcaactttgatttaaaaccttatgaatgaagttagttagc |
34122131 |
T |
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| Q |
222 |
caattagttaaaaggtatttatgaagtactaacacaaatacgaagatcagacactacag---------taatacgtagacacaagtaataaaagtgaagc |
312 |
Q |
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| T |
34122130 |
caattagttaaaaggtatttatgaagtactaacacaaatacgaagatcagacactacagacactacactaatacgtagacacaagtaataaaagtgaagc |
34122031 |
T |
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| Q |
313 |
gtaaatagagttatatatgttacctataactttgtcatcgcaacatagcaacgtagccaaagtggttttcccggatccagccaagccagttaacacatgt |
412 |
Q |
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| T |
34122030 |
gtaaatagagttatatatgttacctataactttgtcatcgcaacatagcaacgtagccaaagtggttttcccggatccagccaagccagttaacacatgt |
34121931 |
T |
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| Q |
413 |
acagagtctacagacacatcactactgagcacccaattct |
452 |
Q |
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| T |
34121930 |
acagagtctacagacacatcactactgagcacccaattct |
34121891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34122307 - 34122233
Alignment:
| Q |
1 |
tcttcaaatctggatttttcgccacatgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaa |
75 |
Q |
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| T |
34122307 |
tcttcaaatctggatttttcgccacatgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaa |
34122233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 34110552 - 34110461
Alignment:
| Q |
1 |
tcttcaaatctggatttttcgccacatgaaagaacaatatattttccccaaattttcctagtccaaacaaacaaacaagattcttaaatatc |
92 |
Q |
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| T |
34110552 |
tcttcaaatttggaatttttgacacagtgaagaacaatatattttccccaaatttacctagtccaaacaaacaaataagattcttaaatatc |
34110461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 34110149 - 34110064
Alignment:
| Q |
332 |
ttacctataactttgtcatcgcaacatagcaacgtagccaaagtggttttcccggatccagccaagccagttaacacatgtacaga |
417 |
Q |
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| T |
34110149 |
ttacctctaactttgtcatcccaacagagcaacgtagccaaagtagttttgccagatccagccaaaccggttaaaacaagtacaga |
34110064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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