View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14531_low_8 (Length: 238)
Name: NF14531_low_8
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_low_8 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 33189365 - 33189158
Alignment:
| Q |
15 |
gagtgttattaagtttttatattaggtctaattcatccttaaaaatccagtttgtaag-taagaagtatcacaatttataactcatttgagactttatct |
113 |
Q |
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| T |
33189365 |
gagtgttattaagtttttatattaggtctaattcatccttaaaaatccggtttgtaaggtaagaattatcacaatttataactcattcgagactttatct |
33189266 |
T |
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| Q |
114 |
ttattataagtgagacttagatttttctcaatacaccattcaatttcaacactattgggcttaatgagtgaatataaatggtggttgtcccaagcgattg |
213 |
Q |
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| T |
33189265 |
ttattataagtgagacttggatttttctcaatacaccattcaatttcaacactattgggcttaatgcgtgaatataaatggtggttgtcccgagcgattg |
33189166 |
T |
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| Q |
214 |
tgtctgat |
221 |
Q |
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|||||||| |
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| T |
33189165 |
tgtctgat |
33189158 |
T |
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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 51692 - 51641
Alignment:
| Q |
21 |
tattaagtttttatattaggtctaattcatccttaaaaatccagtttgtaag |
72 |
Q |
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| T |
51692 |
tattaagtttttatattaggcctaactcatccttacaaaaccggtttgtaag |
51641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 45941116 - 45941168
Alignment:
| Q |
20 |
ttattaagtttttatattaggtctaattcatccttaaaaatccagtttgtaag |
72 |
Q |
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| T |
45941116 |
ttattaagtttttagattgggtctaactcatccttacaaaaccagcttgtaag |
45941168 |
T |
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