View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14531_low_9 (Length: 237)
Name: NF14531_low_9
Description: NF14531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14531_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12616726 - 12616956
Alignment:
| Q |
1 |
ttttttctttctctactatttaaaaacacctaatcgtctttctctagcaagcc----------aatctttcctatatccttgaaattttttataatctta |
90 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12616726 |
ttttttctctctctactatttaaaaacacctaatcgtctttctctagcaagcctcaagatatcaatctttcctatatccttgaaattttttataatcttg |
12616825 |
T |
|
| Q |
91 |
tagatattttaactttgaatatctcttatcatttcaacacggtctccctaaacttaattcctgattccgttgaaacccactctcagactccattaagcac |
190 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12616826 |
tagatattttaactttgaatatatcttatcatttcaacacggtctccctaaacttaattcctgattccgttgaaacccactctcacactccattaagcac |
12616925 |
T |
|
| Q |
191 |
taaacattcttactttccctcattcccatct |
221 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
12616926 |
taaacattcttactttccctcattcacatct |
12616956 |
T |
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