View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_high_1 (Length: 823)
Name: NF14532_high_1
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 767; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 13 - 810
Target Start/End: Original strand, 36288736 - 36289531
Alignment:
| Q |
13 |
gtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgataatgga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36288736 |
gtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatctttttggttttaggcttaatacaaatgatactgga |
36288835 |
T |
|
| Q |
113 |
gaaaggtattttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaagaag |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288836 |
gaaaggtattttgtatatgaagcattggaaaatagtgataaggtaaggttccaacttggatatgatggatatgagagacaattcaggtggaatgaagaag |
36288935 |
T |
|
| Q |
213 |
agaaagaatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagttt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288936 |
agaaagaatggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagttt |
36289035 |
T |
|
| Q |
313 |
gtgcaaatgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgag |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36289036 |
gtgcaaatgcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaagagtgag |
36289135 |
T |
|
| Q |
413 |
agaggtggtaatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaagg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289136 |
agaggtggtaatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaagg |
36289235 |
T |
|
| Q |
513 |
attgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgatgttca |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36289236 |
attgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgattttca |
36289335 |
T |
|
| Q |
613 |
aaggttagaaaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaagaaaagattcattatttttaattggtaacattagtttcc |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289336 |
aaggttagaaaatcaaggaaatacactcaacattcgtcttgctgattctgatttaggtaaagaaaagattcattatttttaattggtaacattagtttcc |
36289435 |
T |
|
| Q |
713 |
cagttttgatgtcaggttgtaatgttagcatgaaaatgataacataaatatatatatgtcttcaaatacagttgatgggaagaaaaagaccaaaattg |
810 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36289436 |
cagttttgatgtcaggttgtaatgttagcatgaaaatgataacataa--atatatatgtcttcaaatacaggtgatgggaagaaaaagaccaaaattg |
36289531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 613
Target Start/End: Complemental strand, 14521329 - 14521216
Alignment:
| Q |
500 |
gttgatagtaaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagt |
599 |
Q |
| |
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||||||| ||||||||||||||| |||||| || ||||| |||||||||||| |||| | | | | ||||||||| ||||||||||||||||| || | |
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| T |
14521329 |
gttgatactaaggattgtgaaggtaattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatt |
14521230 |
T |
|
| Q |
600 |
tagttgatgttcaa |
613 |
Q |
| |
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| || ||||||||| |
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| T |
14521229 |
tggtcgatgttcaa |
14521216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 121 - 521
Target Start/End: Complemental strand, 12096773 - 12096373
Alignment:
| Q |
121 |
ttttgtatatgaagcattggaaaatagtgataaggtaaggttccagcttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
220 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096773 |
ttttttatatgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
12096674 |
T |
|
| Q |
221 |
tggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
320 |
Q |
| |
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|| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096673 |
tgcaatgtgttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
12096574 |
T |
|
| Q |
321 |
gcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtgg |
420 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |
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| T |
12096573 |
gcataaaagggtttgagccaaaggatgtgaaaagttgggatagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggcag |
12096474 |
T |
|
| Q |
421 |
taatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaa |
520 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12096473 |
taatagttttggtggagaagatggttttttggtgcaaaggattttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaa |
12096374 |
T |
|
| Q |
521 |
g |
521 |
Q |
| |
|
| |
|
|
| T |
12096373 |
g |
12096373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 12096838 - 12096769
Alignment:
| Q |
13 |
gtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatcttttt |
82 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
12096838 |
gtggagaagtggttattgggatggtagagttttcacaggtgtgccaaatatgacaggaagatatcttttt |
12096769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 512 - 613
Target Start/End: Complemental strand, 2692243 - 2692142
Alignment:
| Q |
512 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgatgttc |
611 |
Q |
| |
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||||||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| || || |||||||||| |
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| T |
2692243 |
gattgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttc |
2692144 |
T |
|
| Q |
612 |
aa |
613 |
Q |
| |
|
|| |
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|
| T |
2692143 |
aa |
2692142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 607
Target Start/End: Complemental strand, 2699942 - 2699847
Alignment:
| Q |
512 |
gattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgat |
607 |
Q |
| |
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|||||| |||| |||||| | ||||| ||||||||||||| |||| | | | |||||||||||| |||||||||||| |||| || || |||||| |
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| T |
2699942 |
gattgtaaaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgat |
2699847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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