View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_low_2 (Length: 594)
Name: NF14532_low_2
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 38625838 - 38626423
Alignment:
| Q |
1 |
taatgctaggacatacaagtaagaaattttctttacagaagtggtagtattagctgaaaatataatgaagcatgttcttacgattcaaaaacatttcatt |
100 |
Q |
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| T |
38625838 |
taatgctaggacatacaagtaagaaattttctttacagaagtggcagtattagctgaaaatataatgaagcatgttcttacgattcaaaaacatttcatt |
38625937 |
T |
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| Q |
101 |
ttgatcattgaaaacaaatagaatcccagtatttgaatcaaagtaaaaacaatagaagttataaacatcatgcataacttacttcataccaattttatgt |
200 |
Q |
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| T |
38625938 |
ttgatcattgaaaacaaatagaatcccagtatttgaatcaaagtaaaaacaatagaagttataaacatcatgcataacttacttcataccaattttatgt |
38626037 |
T |
|
| Q |
201 |
tttctcctgtagcagaacttctttcatagtgaacatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacac |
300 |
Q |
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| T |
38626038 |
tttctcctgtagcagaacttctttcatagtgaacatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacac |
38626137 |
T |
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| Q |
301 |
accccaaaaatcaagttgcctgtaagtataaggaggtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccc |
400 |
Q |
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| T |
38626138 |
accccaaaaatcaagttgcctgtaagtataaggaagtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccc |
38626237 |
T |
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| Q |
401 |
cctctgnnnnnnngcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacacatggggacaccacatccg |
500 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
38626238 |
cctctgaaaaaaagcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatcct |
38626337 |
T |
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| Q |
501 |
tgttcaaattagatccaccgttggggtaacggccaaaagcaacatcaacctgaatagattcgttcagctgatctcgcaagagccta |
586 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||| |
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| T |
38626338 |
tgttcaaattagatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaaccta |
38626423 |
T |
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