View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_low_3 (Length: 482)
Name: NF14532_low_3
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 43246441 - 43245985
Alignment:
| Q |
13 |
caaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgtttaattgtgggaggtgtggaaagaaatgtagctttcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246441 |
caaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgtttaattgtgggaggtgtggaaagaaatgtagctttcca |
43246342 |
T |
|
| Q |
113 |
aagatatgttgtgaaggtaaatgtgtgaatcctaggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246341 |
aagatatgttgtgaaggtaaatgtgtgaatcctaggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatg |
43246242 |
T |
|
| Q |
213 |
gaatgtgcagatatgcgtagaatttgatatggattaagatgagctatagtgtgaccaataaagtggccactactaaaatttatttgatttttgcattgat |
312 |
Q |
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| T |
43246241 |
gaatgtgcagatatgcgtagaatttgatatggattaagaagagctatagtgtaaccaataaagtggccactactaaaatttatttgatttttgcattgat |
43246142 |
T |
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| Q |
313 |
taattggtgacttggtgtaataataaataatatcgatatttgtttttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaa |
412 |
Q |
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| T |
43246141 |
taattggtgacttggtgtaataataaataatatcgatatttgtttttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaa |
43246042 |
T |
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| Q |
413 |
taaataaaagagctgct--atatttcttaatacttgaaaacatatactctatttttt |
467 |
Q |
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| T |
43246041 |
taaataaaagagctgctatatatttcttaatacttgaaaacatatactctatttttt |
43245985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 8532859 - 8532429
Alignment:
| Q |
13 |
caaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgtttaattgtgggaggtgtggaaagaaatgtagctttcca |
112 |
Q |
| |
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||||||||| |||| ||| |||| ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| || || ||| |
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| T |
8532859 |
caaaggtagcgcaggtcctgattgttgcaacaacaaatgtgtcaattttaccatagacatgtttaactgtgggaggtgtggaaagaaatgcagtttccca |
8532760 |
T |
|
| Q |
113 |
aagatatgttgtgaaggtaaatgtgtgaatcctaggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatg |
212 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
8532759 |
aagatatgctgtgaaggtaaatgtgtgaaccctaggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatg |
8532660 |
T |
|
| Q |
213 |
gaatgtgcagatatgcgtagaatttgatatggattaagatg-----agctata-gtgtgacc--aataaagtggccactactaaaatttatttgat---- |
300 |
Q |
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|||||||||| ||||| |||||||||| | ||| |||||| || |||| ||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
8532659 |
gaatgtgcagctatgcatagaatttgaaaccgatcaagatgtatacag-tatatatgtgaccaaaataaagcagcctctactaaaatttatttgatctta |
8532561 |
T |
|
| Q |
301 |
ttttgcattgattaattggtgacttggtgtaataataaataatatcgatatttgtttttgcttggtattgttat-----ttaagcaaagaatgtaattgg |
395 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| | | || || |||||| ||||||||||||| ||||| ||| ||||||||| |
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| T |
8532560 |
atttgcgttgattaattggtgacttggtgtaataataaataaatttgcta-ttatttttgtttggtattgttatattaattaagaaaaatttgtaattgg |
8532462 |
T |
|
| Q |
396 |
ttgtttatgaaatggaataaataaaagagctgct |
429 |
Q |
| |
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| T |
8532461 |
tagtttatgaaat-gaatgaataaaagagctgct |
8532429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 8551625 - 8551391
Alignment:
| Q |
13 |
caaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgtttaattgtgggaggtgtggaaagaaatgtagctttcca |
112 |
Q |
| |
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||||||||| |||| ||| |||| ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| || || ||| |
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| T |
8551625 |
caaaggtagcgcaggtcctgattgttgcaacaacaaatgtgtcaattttaccatagacatgtttaactgtgggaggtgtggaaagaaatgcagtttccca |
8551526 |
T |
|
| Q |
113 |
aagatatgttgtgaaggtaaatgtgtgaatcctaggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatg |
212 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
8551525 |
aagatatgctgtgaaggtaaatgtgtgaaccctaggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatg |
8551426 |
T |
|
| Q |
213 |
gaatgtgcagatatgcgtagaatttgatatggatt |
247 |
Q |
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| T |
8551425 |
gaatgtgcagctatgcctagaatttcaaatggatt |
8551391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 8541128 - 8540896
Alignment:
| Q |
14 |
aaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgtttaattgtgggaggtgtggaaagaaatgtagctttccaa |
113 |
Q |
| |
|
|||||||| |||| ||| |||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || || |||| |
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| T |
8541128 |
aaaggtagcgcaggtcctgattgctgcaagaacaaatgtgtcaactttaccatagacatgtttaactgtgggaggtgtggaaagaaatgcagtttcccaa |
8541029 |
T |
|
| Q |
114 |
agatatgttgtgaaggtaaatgtgtgaatcctaggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatgg |
213 |
Q |
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|||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||| |
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| T |
8541028 |
ggatatgctgtgaaggtaaatgtgtgaaccctaggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgacagtaaaggttcttgtgtttatgg |
8540929 |
T |
|
| Q |
214 |
aatgtgcagatatgcgtagaatttgatatggat |
246 |
Q |
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|||||||| ||||| |||||||| | |||||| |
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| T |
8540928 |
gatgtgcagctatgcctagaatttcaaatggat |
8540896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 8551353 - 8551272
Alignment:
| Q |
325 |
tggtgtaataataaataatatcgatatttgtttttgcttggtattgttat---ttaagcaaagaatgtaattggttgtttat |
403 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||| | ||||||||||||||||| |
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| T |
8551353 |
tggtgtaataataaataatactgacatttgtttttgtttagtattgttattaattaagcaaaaattgtaattggttgtttat |
8551272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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