View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14532_low_4 (Length: 482)

Name: NF14532_low_4
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14532_low_4
NF14532_low_4
[»] chr3 (31 HSPs)
chr3 (20-482)||(38626633-38627095)
chr3 (286-361)||(39657982-39658057)
chr3 (287-365)||(42644300-42644379)
chr3 (325-371)||(48089641-48089687)
chr3 (287-390)||(30958105-30958209)
chr3 (287-390)||(30973917-30974021)
chr3 (327-365)||(7012678-7012716)
chr3 (329-367)||(24916576-24916614)
chr3 (279-365)||(25129444-25129530)
chr3 (287-365)||(31766160-31766238)
chr3 (327-364)||(10852738-10852775)
chr3 (327-364)||(23918881-23918918)
chr3 (327-384)||(50664777-50664834)
chr3 (329-384)||(1441362-1441417)
chr3 (287-374)||(25181239-25181326)
chr3 (286-365)||(32112088-32112167)
chr3 (318-365)||(40415312-40415359)
chr3 (286-365)||(44225603-44225682)
chr3 (279-358)||(49158621-49158700)
chr3 (329-387)||(3776594-3776652)
chr3 (323-365)||(7899143-7899185)
chr3 (323-365)||(16246115-16246157)
chr3 (327-365)||(23496355-23496393)
chr3 (287-365)||(41115275-41115353)
chr3 (323-365)||(52931593-52931635)
chr3 (328-365)||(31084245-31084282)
chr3 (327-380)||(34561131-34561184)
chr3 (329-382)||(41591308-41591361)
chr3 (328-373)||(49526695-49526740)
chr3 (332-388)||(7262885-7262941)
chr3 (335-363)||(47278803-47278831)
[»] chr8 (21 HSPs)
chr8 (324-390)||(2764419-2764485)
chr8 (329-384)||(15206723-15206778)
chr8 (327-365)||(19649232-19649270)
chr8 (287-382)||(32994153-32994250)
chr8 (329-390)||(16972019-16972080)
chr8 (329-373)||(32767475-32767519)
chr8 (327-362)||(10552934-10552969)
chr8 (287-390)||(18123295-18123398)
chr8 (286-365)||(29970848-29970927)
chr8 (287-390)||(32927961-32928064)
chr8 (343-390)||(43492206-43492253)
chr8 (327-365)||(22936818-22936856)
chr8 (327-365)||(31246340-31246378)
chr8 (328-374)||(33588757-33588803)
chr8 (286-364)||(38715193-38715271)
chr8 (327-365)||(43550937-43550975)
chr8 (329-390)||(36447703-36447764)
chr8 (328-365)||(36779437-36779474)
chr8 (300-365)||(38516344-38516409)
chr8 (330-371)||(38875211-38875252)
chr8 (428-471)||(5997374-5997418)
[»] chr7 (20 HSPs)
chr7 (287-387)||(40491650-40491750)
chr7 (288-373)||(15311189-15311274)
chr7 (325-390)||(40561709-40561774)
chr7 (323-363)||(26975305-26975345)
chr7 (329-389)||(45557435-45557495)
chr7 (330-384)||(18350120-18350174)
chr7 (287-361)||(42481803-42481877)
chr7 (329-373)||(29829324-29829368)
chr7 (327-371)||(38230121-38230165)
chr7 (327-365)||(42752203-42752241)
chr7 (327-365)||(48459769-48459807)
chr7 (328-365)||(4228606-4228643)
chr7 (327-364)||(10371970-10372007)
chr7 (329-390)||(12306792-12306853)
chr7 (327-364)||(20088929-20088966)
chr7 (330-391)||(22310415-22310476)
chr7 (329-390)||(27571931-27571992)
chr7 (408-476)||(45369107-45369176)
chr7 (329-389)||(38123621-38123681)
chr7 (327-363)||(44967411-44967447)
[»] chr2 (21 HSPs)
chr2 (330-390)||(15220817-15220877)
chr2 (328-373)||(3853939-3853984)
chr2 (329-390)||(16518847-16518908)
chr2 (286-365)||(12110921-12111000)
chr2 (323-365)||(11005710-11005752)
chr2 (327-365)||(23359953-23359991)
chr2 (300-356)||(3716571-3716627)
chr2 (329-365)||(10918650-10918686)
chr2 (323-390)||(32307153-32307220)
chr2 (286-357)||(40704682-40704753)
chr2 (327-365)||(1945062-1945100)
chr2 (327-365)||(23377551-23377589)
chr2 (323-365)||(31224727-31224769)
chr2 (286-363)||(10618862-10618939)
chr2 (327-364)||(30007576-30007613)
chr2 (328-365)||(34433330-34433367)
chr2 (328-365)||(42089552-42089589)
chr2 (302-362)||(1763270-1763330)
chr2 (329-373)||(4908876-4908920)
chr2 (329-365)||(8843060-8843096)
chr2 (329-361)||(21105561-21105593)
[»] chr4 (26 HSPs)
chr4 (323-390)||(22683933-22684000)
chr4 (286-374)||(39000531-39000619)
chr4 (287-365)||(38740287-38740365)
chr4 (286-384)||(43868211-43868309)
chr4 (329-390)||(33843780-33843841)
chr4 (328-365)||(36150627-36150664)
chr4 (286-363)||(48575480-48575557)
chr4 (330-371)||(54487248-54487289)
chr4 (329-389)||(25927376-25927436)
chr4 (408-470)||(2171738-2171801)
chr4 (331-390)||(17898085-17898144)
chr4 (280-351)||(24364098-24364169)
chr4 (323-390)||(25319117-25319184)
chr4 (323-362)||(46382869-46382908)
chr4 (327-365)||(16566328-16566366)
chr4 (327-365)||(22699765-22699803)
chr4 (327-365)||(22980727-22980765)
chr4 (327-365)||(22994314-22994352)
chr4 (323-365)||(41866177-41866219)
chr4 (323-365)||(52062999-52063041)
chr4 (328-365)||(14597650-14597687)
chr4 (327-364)||(28947774-28947811)
chr4 (323-391)||(1023867-1023935)
chr4 (298-358)||(12224459-12224519)
chr4 (327-363)||(33574203-33574239)
chr4 (327-363)||(54488630-54488666)
[»] chr6 (17 HSPs)
chr6 (325-387)||(882758-882820)
chr6 (280-386)||(1499973-1500079)
chr6 (323-362)||(25208723-25208762)
chr6 (286-395)||(3524989-3525098)
chr6 (287-391)||(8856375-8856479)
chr6 (292-344)||(9043722-9043774)
chr6 (323-363)||(20846423-20846463)
chr6 (335-391)||(34620954-34621010)
chr6 (335-391)||(34748391-34748447)
chr6 (329-391)||(434192-434254)
chr6 (323-365)||(16442371-16442413)
chr6 (327-365)||(16548177-16548215)
chr6 (328-365)||(7486524-7486561)
chr6 (328-384)||(8551118-8551175)
chr6 (328-368)||(3605777-3605817)
chr6 (325-365)||(6364574-6364614)
chr6 (329-365)||(29240407-29240443)
[»] chr1 (29 HSPs)
chr1 (327-365)||(29759713-29759751)
chr1 (298-352)||(47307505-47307559)
chr1 (287-364)||(13344836-13344913)
chr1 (329-390)||(34915135-34915196)
chr1 (329-390)||(35961437-35961498)
chr1 (301-365)||(4347036-4347100)
chr1 (328-384)||(7301834-7301890)
chr1 (323-363)||(7335901-7335941)
chr1 (279-390)||(12655314-12655424)
chr1 (329-391)||(5268287-5268349)
chr1 (327-384)||(44786871-44786928)
chr1 (289-365)||(3887364-3887439)
chr1 (323-363)||(32365143-32365183)
chr1 (339-390)||(213246-213297)
chr1 (287-366)||(40642990-40643069)
chr1 (335-390)||(48548975-48549030)
chr1 (327-365)||(1199889-1199927)
chr1 (327-365)||(20800303-20800341)
chr1 (327-373)||(33693088-33693134)
chr1 (327-365)||(35569228-35569266)
chr1 (327-365)||(40352453-40352491)
chr1 (327-365)||(48510970-48511008)
chr1 (329-363)||(50751256-50751290)
chr1 (329-390)||(7524182-7524243)
chr1 (284-361)||(26253024-26253101)
chr1 (329-357)||(3819719-3819747)
chr1 (279-362)||(18325296-18325377)
chr1 (329-389)||(42423142-42423202)
chr1 (329-365)||(47978389-47978425)
[»] scaffold0172 (1 HSPs)
scaffold0172 (286-365)||(15241-15320)
[»] chr5 (21 HSPs)
chr5 (290-373)||(29922986-29923069)
chr5 (323-365)||(2483732-2483774)
chr5 (323-365)||(2868371-2868413)
chr5 (335-373)||(4306598-4306636)
chr5 (327-365)||(22811078-22811116)
chr5 (330-363)||(24036627-24036660)
chr5 (302-362)||(5465398-5465458)
chr5 (302-362)||(6988217-6988277)
chr5 (408-471)||(10898672-10898736)
chr5 (323-387)||(10957205-10957268)
chr5 (323-390)||(28304821-28304888)
chr5 (327-365)||(19784865-19784903)
chr5 (327-365)||(22482241-22482279)
chr5 (327-361)||(35816985-35817019)
chr5 (411-480)||(38045390-38045460)
chr5 (302-391)||(10273268-10273357)
chr5 (408-472)||(29922575-29922640)
chr5 (328-369)||(40885259-40885300)
chr5 (328-365)||(43152386-43152423)
chr5 (287-363)||(14299422-14299498)
chr5 (280-388)||(14671096-14671203)
[»] scaffold0393 (1 HSPs)
scaffold0393 (408-473)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (335-391)||(14075-14131)
[»] scaffold0031 (2 HSPs)
scaffold0031 (323-364)||(99701-99742)
scaffold0031 (323-363)||(99918-99958)
[»] scaffold0009 (1 HSPs)
scaffold0009 (327-364)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (328-365)||(219691-219728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (327-395)||(23546-23614)
[»] scaffold0015 (1 HSPs)
scaffold0015 (301-365)||(65538-65602)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 38627095 - 38626633
Alignment:
Q  20 gggttcgcttcttaacggcggtggcaatggaagtgaagcggtaagggttttggatccggaggttgttgatgtgtattttgttccgnnnnnnncttcgctt 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  38627095 gggttcgcttcttaacggtggtggcaatggaagtgaagcggtaagggttttggatccggaggttgttgatgtgtattttgttccgtttttttcttcgctt 38626996  T
Q  120 agttttaatacccatggccatcacatgagggatccggaaacggagattgatcatcaattgcaggtatttgattcgtttaacccgactcgtctgctgtcat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626995 agttttaatacccatggccatcacatgagggatccggaaacggagattgatcatcaattgcaggtatttgattcgtttaacccgactcgtctgctgtcat 38626896  T
Q  220 tgcaagttccaacagcagtattgcatagaagttgcttgtgtatttgtctctaactgaatgtgacataaattgatttttaatgaattgattatgtaaagtc 319  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626895 tgcaagttccaacagtagtattgcatagaagttgcttgtgtatttgtctctaactgaatgtgacataaattgatttttaatgaattgattatgtaaagtc 38626796  T
Q  320 gactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaagatacaaattcaagtctcaagttataat 419  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38626795 gactttagttaaaagtgagttgaatgtgaaatgatttatgtttggacatattcacgtggaagtgagttgaaagatacaaattcaagtctcaagttataat 38626696  T
Q  420 caattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctc 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626695 caattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaaatttgctc 38626633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 39657982 - 39658057
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 361  Q
    ||||||||||| ||| ||||||||||||||| | || |||| ||||||||  |||||||||||||| |||||||||    
T  39657982 aaattgattttgaataaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaaataatttatgtt 39658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 42644379 - 42644300
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaag-tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||| | |||||||||| | ||||  | || ||||||||||||||||||||||||||| |||||||||||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttgga 42644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 48089641 - 48089687
Alignment:
Q  325 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 371  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  48089641 tagttaaaagtgagttgaatgtaaaatgatttatgattggatacatt 48089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 30958209 - 30958105
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 385  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30958110  T
Q  386 ttgaa 390  Q
    |||||    
T  30958109 ttgaa 30958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 30974021 - 30973917
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 385  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30973922  T
Q  386 ttgaa 390  Q
    |||||    
T  30973921 ttgaa 30973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 7012716 - 7012678
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7012716 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 7012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 24916614 - 24916576
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggaca 367  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24916614 taaaagtgagttgaatgtaaaatgatttatgtttagaca 24916576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 25129444 - 25129530
Alignment:
Q  279 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||| || |||||||||||  |||||| | || |   | ||||||||||||||||||||  |||||||||||||||    
T  25129444 gtgacataaattgatcttgaatgaattgatgttgtaaaattgattcaggataaaagtgagttgaatgtaacgtgatttatgtttgga 25129530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 31766160 - 31766238
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||| |||||||||||| |||||| |  | ||| | |||||||||||||||  |||| |||||||||||||||    
T  31766160 aattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttgga 31766238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 10852738 - 10852775
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10852738 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 10852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 23918918 - 23918881
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23918918 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 23918881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 50664834 - 50664777
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    |||||||||||||||||||| || ||||||||||||||| |||  ||| |||||||||    
T  50664834 gttaaaagtgagttgaatgtgaattgatttatgtttggatacacacacttagaagtga 50664777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 1441362 - 1441417
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    ||||||||||||||| ||||| |||||| ||||| || ||||||||||| ||||||    
T  1441362 taaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 25181326 - 25181239
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 374  Q
    ||||||| || | |||||||||| |||| | | || |||  ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  25181326 aattgatattgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 25181239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 32112167 - 32112088
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||| | ||||||||||||||||| | || | | | ||||| ||||||||||| ||| | |||||||||||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttgga 32112088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 40415312 - 40415359
Alignment:
Q  318 tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||||    
T  40415312 tcgattttagttaaaagtgagttggatgtaaattaatttatgtttgga 40415359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 44225682 - 44225603
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||| |   |||||||| |||| | | || ||| |||||||||||||| |||||||| |||||||||||||||    
T  44225682 aaattgattttaatataattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgtttgga 44225603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 49158700 - 49158621
Alignment:
Q  279 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttat 358  Q
    |||| ||||||||||||| |||||||||||| |||||| | || || || ||||||||| | |||| ||| |||||||||    
T  49158700 gtgatataaattgattttgaatgaattgattttgtaaaattgatttaagataaaagtgactagaatataagatgatttat 49158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 3776652 - 3776594
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 387  Q
    ||||| ||||||||||||||| ||||||||| ||||| ||||| | ||| |||||||||    
T  3776652 taaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagtt 3776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 7899143 - 7899185
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  7899143 tttagttaaaagatagttgaatgtaaaacgatttatgtttgga 7899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 16246115 - 16246157
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  16246115 tttagttaaaagtgagttagatgtaaattgatttatgtttgga 16246157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 23496393 - 23496355
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  23496393 gttaaaagtgagttgaatgtgaattgatttatgtttgga 23496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 41115275 - 41115353
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||| | |||||||||||| |||| | | || ||| | ||| | |||||||||||||||||| ||||||||||||    
T  41115275 aattgattatgaatgaattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttgga 41115353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 52931593 - 52931635
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| | |||||| |||||||||||||||    
T  52931593 tttagttaaaagtgagtttagtgtaaattgatttatgtttgga 52931635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 31084282 - 31084245
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31084282 ttaaaagtgagttgaatgtgaattgatttatgtttgga 31084245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 34561184 - 34561131
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaa 380  Q
    |||||||||||||||||||  || ||||||||||||||| ||||| || |||||    
T  34561184 gttaaaagtgagttgaatgcgaattgatttatgtttggatacattgacttagaa 34561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 41591308 - 41591361
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagt 382  Q
    ||||| |||||||||| |||| ||||||||||||||| ||||||| ||| ||||    
T  41591308 taaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 49526695 - 49526740
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    |||||||||| |||| |||||| ||||||||||||||| |||||||    
T  49526695 ttaaaagtgaattgattgtaaattgatttatgtttggatacattca 49526740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 7262941 - 7262885
Alignment:
Q  332 aagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttg 388  Q
    |||||||||||| ||| |||| ||||||||| || ||||||| ||| ||||||||||    
T  7262941 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttg 7262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 47278831 - 47278803
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||||||||||||||||||||||||    
T  47278831 tgagttgaatgtaaaatgatttatgtttg 47278803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 2764419 - 2764485
Alignment:
Q  324 ttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||||| |||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||    
T  2764419 ttagttaaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaa 2764485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 15206778 - 15206723
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    |||||||||||||||||| || ||||||||||||||| ||||| || |||||||||    
T  15206778 taaaagtgagttgaatgtgaattgatttatgtttggatacattgacttagaagtga 15206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 19649270 - 19649232
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19649270 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 19649232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 32994153 - 32994250
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaa--tgatttatgtttggacacattcacgtagaagt 382  Q
    |||||||||| |||||| |||||||||||| | || | | | | ||||||||||||| ||||||  |||||||||||||||| |||||| ||| ||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagt 32994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 16972019 - 16972080
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||| ||| |||||| |||||    
T  16972019 taaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaa 16972080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 32767519 - 32767475
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattca 32767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 10552934 - 10552969
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10552934 gttaaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 18123398 - 18123295
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 386  Q
    |||||||||  | ||||||||| ||||||| |||||| ||  ||||||||| ||||| |||||||||||| |||| | | | ||| | ||| ||||||||    
T  18123398 aattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgagt 18123299  T
Q  387 tgaa 390  Q
    ||||    
T  18123298 tgaa 18123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 29970927 - 29970848
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||| |  ||||||| | |||| | | || |||||||||||||||||||| | |||| |||||||||||||||    
T  29970927 aaattgattttgatagaattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgtttgga 29970848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 32928064 - 32927961
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 386  Q
    |||||||||| |  |||||||||||||||| | || | |   ||||| ||||||||| | ||| |||||| |||||||| ||||||| ||| ||||||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagt 32927965  T
Q  387 tgaa 390  Q
    ||||    
T  32927964 tgaa 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 43492206 - 43492253
Alignment:
Q  343 atgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||||||||||||| ||||||| ||| |||| |||||||    
T  43492206 atgtaaaatgatttatgtttggatacattcatgtaaaagtaagttgaa 43492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 22936818 - 22936856
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22936818 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22936856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 31246340 - 31246378
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  31246340 gttaaaagtgagttgaatgtgaattgatttatgtttgga 31246378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 33588803 - 33588757
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 374  Q
    ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  33588803 ttaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 33588757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 38715193 - 38715271
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||| | |||||||||| || | | | || ||||||||||| |||||| | |||||| ||||||||||||||    
T  38715193 aaattgattttaattgaattgattttgcagaattgattttagttaaaattgagttaagtgtaaagtgatttatgtttgg 38715271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 43550975 - 43550937
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  43550975 gttaaaagtgagttgaatgtgaattgatttatgtttgga 43550937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 36447703 - 36447764
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||||||||| ||||||||||| ||||| || ||||| | ||| || |||||||||    
T  36447703 taaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaa 36447764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 36779474 - 36779437
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||||| | |||||||||||||    
T  36779474 ttaaaagtgagttgaatgtaaagtaatttatgtttgga 36779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 38516409 - 38516344
Alignment:
Q  300 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||| |||| | | || ||| | ||| ||||||||||||||||| |||||||||||||||    
T  38516409 tgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttgga 38516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 38875211 - 38875252
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 371  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38875211 aaaagtgagttcaatgtaaagtgatttatgtttggatacatt 38875252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 471
Target Start/End: Original strand, 5997374 - 5997418
Alignment:
Q  428 gaggcaaaatcaattttactggaaa-catccaaacatgtcaaaat 471  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||    
T  5997374 gaggcaaaatcaattttactcaaaaacatccaaacatgtcaaaat 5997418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 40491750 - 40491650
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 386  Q
    |||||||||| | |||||||||| |||||| | || |||   ||||||||||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagt 40491651  T
Q  387 t 387  Q
    |    
T  40491650 t 40491650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 373
Target Start/End: Original strand, 15311189 - 15311274
Alignment:
Q  288 attgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||||||| ||  |||||||| |||||| | || | | ||||||||||||||||||||| | ||||||||||||||| |||||||    
T  15311189 attgattttgaactaattgattgtgtaaaattgaatatggttaaaagtgagttgaatgtatagtgatttatgtttggatacattca 15311274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 40561709 - 40561774
Alignment:
Q  325 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||| |||| ||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  40561709 tagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 26975305 - 26975345
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26975305 tttagttataagtgagttgaatgtaaaatgatttatgtttg 26975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 45557495 - 45557435
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 389  Q
    ||||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||||||||||    
T  45557495 taaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 18350120 - 18350174
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    |||||||||||||||||||||||||||||||||  | ||||||||| | ||||||    
T  18350120 aaaagtgagttgaatgtaaaatgatttatgtttacatacattcacgaaaaagtga 18350174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 42481803 - 42481877
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 361  Q
    |||||||||| | ||||||||||||||||| | || | |    ||||||||||||||||||||||||||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 29829324 - 29829368
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||    
T  29829324 taaaaatgagttgaatgtaaagtgatttatgtttggatacattca 29829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 38230165 - 38230121
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 371  Q
    |||||||||||||||||||| || ||||||||||||||| |||||    
T  38230165 gttaaaagtgagttgaatgtgaattgatttatgtttggatacatt 38230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 42752203 - 42752241
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  42752203 gttaaaagtgagttgaatgtgaattgatttatgtttgga 42752241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 48459807 - 48459769
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48459807 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48459769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 4228643 - 4228606
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  4228643 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 4228606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 10371970 - 10372007
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    |||||||||||||||||||| || ||||||||||||||    
T  10371970 gttaaaagtgagttgaatgtgaattgatttatgtttgg 10372007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 12306853 - 12306792
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||||||||  |||| ||||||||||||||  | ||||| ||| ||||||||||||    
T  12306853 taaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaa 12306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 20088966 - 20088929
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  20088966 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 20088929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 22310415 - 22310476
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    |||| |||||||||  ||||| |||||||||||||| |||||| |||| |||||| ||||||    
T  22310415 aaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaa 22310476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 27571992 - 27571931
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||||| || ||||||||||||||| ||||| ||||| | ||| | ||||||||||    
T  27571992 taaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaa 27571931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 45369176 - 45369107
Alignment:
Q  408 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaat 476  Q
    |||||||| |||||||||  || |||||||||||| |||| || ||||||||||||| ||||||| ||||    
T  45369176 tcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaat 45369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 38123621 - 38123681
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 389  Q
    ||||| ||||||||| ||||| | |||| |||| ||||||||||| ||| |||||||||||    
T  38123621 taaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttga 38123681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 44967411 - 44967447
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||||||||||||||| || |||||||||||||    
T  44967411 gttaaaagtgagttgaatgtgaattgatttatgtttg 44967447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 15220817 - 15220877
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||||    
T  15220817 aaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaa 15220877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 3853984 - 3853939
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  3853984 ttaaaagtgagttgaatgtaaattgatttatgtttggatacattca 3853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 16518908 - 16518847
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  16518908 taaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaa 16518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 12111000 - 12110921
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  12111000 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 12110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 11005710 - 11005752
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  11005710 tttagttaatagtgacttgaatgtaaaatgatttatgtttgga 11005752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 23359953 - 23359991
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23359953 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 23359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 3716571 - 3716627
Alignment:
Q  300 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattt 356  Q
    |||||||||||| ||||||  | ||||||||||| ||||||||| ||||||||||||    
T  3716571 tgaattgattatctaaagtttattttagttaaaaatgagttgaaggtaaaatgattt 3716627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 10918686 - 10918650
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10918686 taaaagtgagttgaatgtaaagtgatttatgtttgga 10918650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 32307220 - 32307153
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||| ||||| ||||||||||||  |||| |||||| | |||||| || ||||||||||||    
T  32307220 tttagttaaaattgagtcgaatgtaaaatggcttatatttggataaattcacataaaagtgagttgaa 32307153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 40704753 - 40704682
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattta 357  Q
    ||||||||||| |||||||||||||||| || | || ||| ||||||| | | ||||||||||| |||||||    
T  40704753 aaattgattttgaatgaattgattatgtgaaattgattttggttaaaatttatttgaatgtaaattgattta 40704682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 1945062 - 1945100
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1945062 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 23377589 - 23377551
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  23377589 gttaaaagtgagttgaatgtaagttgatttatgtttgga 23377551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 31224769 - 31224727
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  31224769 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 31224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 10618862 - 10618939
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    ||||||||||||| |||||||||| |||||| | || | ||| ||||| ||| ||||| ||||| ||| |||||||||    
T  10618862 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttg 10618939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 30007576 - 30007613
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    |||||||||||||||||||| || ||||||||||||||    
T  30007576 gttaaaagtgagttgaatgtgaattgatttatgtttgg 30007613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 34433330 - 34433367
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||| || |||||||||||||||    
T  34433330 ttaaaagtgagttgaatgtgaattgatttatgtttgga 34433367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 42089552 - 42089589
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42089552 ttaaaagtgagttgaatgtgaattgatttatgtttgga 42089589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 1763330 - 1763270
Alignment:
Q  302 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    |||||||| |||||| | || ||| ||||||| |||||||||| |||| ||||||||||||    
T  1763330 aattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgttt 1763270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 4908920 - 4908876
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||||    
T  4908920 taaaagtgagtttcatgtaaagtgatttatgtttggatacattca 4908876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 8843096 - 8843060
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||| || ||||||||||||||||||||||||||||    
T  8843096 taaaattgggttgaatgtaaaatgatttatgtttgga 8843060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 21105593 - 21105561
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtt 361  Q
    ||||||||| |||||||||||||||||||||||    
T  21105593 taaaagtgaattgaatgtaaaatgatttatgtt 21105561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 22684000 - 22683933
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||| | ||| ||| ||||||||    
T  22684000 tttacttaaaagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaa 22683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 39000531 - 39000619
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 374  Q
    ||||||||||| | |||||||||| |||| | | || |||||||||||||||| | |||  ||||||||||||||||||| || |||||    
T  39000531 aaattgattttgattgaattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtttggataccttcac 39000619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 38740287 - 38740365
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||||||||||||||  | || |||||||||||||||    
T  38740287 aattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttgga 38740365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 43868309 - 43868211
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    ||||||||||| |||||||||||| |||||| |  | | ||||||||||| ||||||| ||||| |||||| | |||||| ||||| | ||| ||||||    
T  43868309 aaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaagtga 43868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 33843841 - 33843780
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||| ||||||| ||||||||||||||| | ||||| |||  |||||||||||    
T  33843841 taaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaa 33843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 36150664 - 36150627
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36150664 ttaaaagtgagttgaatgtaaagtgatttatgtttgga 36150627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 48575557 - 48575480
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    ||||| ||||| |||||||||||| |||||| | || ||| | ||||| |||||||||||||||||| ||||| ||||    
T  48575557 aaattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttatttttg 48575480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 54487248 - 54487289
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 371  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatacatt 54487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 25927436 - 25927376
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 389  Q
    ||||||||||||||| |||||||| ||||| ||| || ||||||||||| |||||| ||||    
T  25927436 taaaagtgagttgaaagtaaaatgttttatatttcgatacattcacgtaaaagtgaattga 25927376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 2171801 - 2171738
Alignment:
Q  408 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaa 470  Q
    |||||||  |||||||||| | |||||| ||||||||||| || ||||||||||||||||||||    
T  2171801 tcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 390
Target Start/End: Original strand, 17898085 - 17898144
Alignment:
Q  331 aaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||||||||| ||||||||||||||| | ||| | ||| |||||| |||||    
T  17898085 aaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaa 17898144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 24364098 - 24364169
Alignment:
Q  280 tgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaat 351  Q
    ||||| ||||||||||| ||||||||||||||||||| | || | |   ||||||||| |||||||||||||    
T  24364098 tgacaaaaattgattttgaatgaattgattatgtaaaattgattctcactaaaagtgatttgaatgtaaaat 24364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 25319184 - 25319117
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||| |||||||| ||||||||||||| |  ||||||||| || ||||| ||||| ||||||||||||    
T  25319184 tttacttaaaagtaagttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaa 25319117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 46382908 - 46382869
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  46382908 tttagataaaagtaagttgaatgtaaaatgatttatgttt 46382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 16566366 - 16566328
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16566366 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 22699803 - 22699765
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22699803 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22699765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 22980727 - 22980765
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22980727 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 22994314 - 22994352
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22994314 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22994352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 41866219 - 41866177
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  41866219 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 41866177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 52062999 - 52063041
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  52062999 tttagttaaaagtgagtttaaggtaaaatgatttctgtttgga 52063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 14597650 - 14597687
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  14597650 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 14597687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 28947774 - 28947811
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  28947774 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 28947811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 1023867 - 1023935
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||| ||||||||||||||| ||||| |||||| |||||||| | ||| | ||  |||||||||||||    
T  1023867 tttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtgagttgaaa 1023935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 12224519 - 12224459
Alignment:
Q  298 aatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttat 358  Q
    |||||||||||| |||||| |  | ||||||||||||| ||||||||| ||||| ||||||    
T  12224519 aatgaattgattttgtaaaatttattttagttaaaagtaagttgaatgcaaaataatttat 12224459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 33574239 - 33574203
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||||||||||||||| || |||||||||||||    
T  33574239 gttaaaagtgagttgaatgtgaattgatttatgtttg 33574203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 54488666 - 54488630
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||||||||||||||| || |||||||||||||    
T  54488666 gttaaaagtgagttgaatgtgaattgatttatgtttg 54488630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 882820 - 882758
Alignment:
Q  325 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 387  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||||| | | |||||||||    
T  882820 tagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagtt 882758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 1500079 - 1499973
Alignment:
Q  280 tgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtaga 379  Q
    ||||| ||||||||||| | |||||||||| |||||| | || ||| | |||||| ||||||| |||||| ||||||||||||| | ||||| | ||| |    
T  1500079 tgacaaaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaa 1499980  T
Q  380 agtgagt 386  Q
    |||||||    
T  1499979 agtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 25208762 - 25208723
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  25208762 tttaattaaaagtgagttgaatgtaaaatgatttatgttt 25208723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 395
Target Start/End: Complemental strand, 3525098 - 3524989
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgag 385  Q
    ||||| ||||| ||||||||||||||||||| | || | | | ||||||||||||||||| ||| || ||||| |||| | ||||| | ||| |||| ||    
T  3525098 aaattaattttgaatgaattgattatgtaaaattgattgtggctaaaagtgagttgaatgcaaactggtttatatttgaatacatttatgtaaaagtcag 3524999  T
Q  386 ttgaaagata 395  Q
    ||||| ||||    
T  3524998 ttgaacgata 3524989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 8856479 - 8856375
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 386  Q
    |||||||||| ||  ||||||| |||| || | || |||  ||||||||  |||||| |||||||||||| |||||||| ||||||| ||  ||||||||    
T  8856479 aattgattttgaaaaaattgatcatgtcaaattgaattttattaaaagttggttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagt 8856380  T
Q  387 tgaaa 391  Q
    |||||    
T  8856379 tgaaa 8856375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 9043722 - 9043774
Alignment:
Q  292 atttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaat 344  Q
    |||||||||||||||||| |||| | | || ||||||||||||||||||||||    
T  9043722 atttttaatgaattgattttgtataattgattttagttaaaagtgagttgaat 9043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 20846463 - 20846423
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  20846463 tttagttaaaaatgagtagaatgtaaaatgatttatgtttg 20846423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 34621010 - 34620954
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34620954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 34748447 - 34748391
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34748391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 434192 - 434254
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||||||||||| | |||||||||||| |||||||| | ||||  ||| |||||||||||||    
T  434192 taaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaa 434254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 16442371 - 16442413
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||| ||||||||||||||| || |||||||||||||||    
T  16442371 tttagttacaagtgagttgaatgtgaattgatttatgtttgga 16442413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 16548215 - 16548177
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16548215 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16548177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 7486561 - 7486524
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||| || |||||||||||||||||||||    
T  7486561 ttaaaagtgagtttaaggtaaaatgatttatgtttgga 7486524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 8551118 - 8551175
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacg-tagaagtga 384  Q
    ||||||||||||||| || ||| |||||||||||||||||| || ||| |||||||||    
T  8551118 ttaaaagtgagttgagtgaaaagtgatttatgtttggacacctttacgatagaagtga 8551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 3605777 - 3605817
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacac 368  Q
    ||||||||||||||| || ||| ||||||||||||||||||    
T  3605777 ttaaaagtgagttgagtgaaaagtgatttatgtttggacac 3605817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 6364574 - 6364614
Alignment:
Q  325 tagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  6364574 tagttaaaagtgaatttaaggtaaaatgatttatgtttgga 6364614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 29240407 - 29240443
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||| | |||||||||||||    
T  29240407 taaaagtgagttgaatgtaaattcatttatgtttgga 29240443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 29759751 - 29759713
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759751 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 29759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 47307559 - 47307505
Alignment:
Q  298 aatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatg 352  Q
    |||||||||||| | |||| | |||||||||||||||||||||||||||||||||    
T  47307559 aatgaattgattttataaaattgactttagttaaaagtgagttgaatgtaaaatg 47307505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 13344913 - 13344836
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    |||||||||| | |||||||||| |||| | | || ||| ||||||||||||||||| ||||| ||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttgg 13344836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 34915196 - 34915135
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||| ||| ||||||||||||    
T  34915196 taaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 35961498 - 35961437
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  35961498 taaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 4347100 - 4347036
Alignment:
Q  301 gaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| |||| | | || ||| ||||||||||||||||||||||| |||||||||||||||    
T  4347100 gaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 4347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 7301834 - 7301890
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||||| ||||||    
T  7301834 ttaaaagtgatttgaatgtaaaatgatttatatttggtaacattcacgtaaaagtga 7301890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 7335901 - 7335941
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  7335901 tttagttaaaagtgagttgaatgtaaagtgatttatgtttg 7335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 12655424 - 12655314
Alignment:
Q  279 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtag 378  Q
    |||||| |||| ||||||  ||||||||||||||| || | || |||| ||||||| |||||||||||| |||| | ||||||| || | ||||| |||     
T  12655424 gtgacaaaaatagattttagatgaattgattatgtgaaattgattttacttaaaagcgagttgaatgtagaatggtctatgtttagataaattcatgta- 12655326  T
Q  379 aagtgagttgaa 390  Q
    ||||||||||||    
T  12655325 aagtgagttgaa 12655314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 5268349 - 5268287
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||||||||||||||||||| |||||| |||||| | | ||||| ||| |||||||||||||    
T  5268349 taaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaaa 5268287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 44786871 - 44786928
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 384  Q
    ||||||| ||||||||||||||||||||||||||| | | ||||||| ||| ||||||    
T  44786871 gttaaaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 3887364 - 3887439
Alignment:
Q  289 ttgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||| ||||||||| || |||||| | || ||||| |||| ||||||| ||||||||||| ||||||||||||    
T  3887364 ttgattttgaatgaattggttttgtaaaat-gattttagataaaggtgagttcaatgtaaaatgttttatgtttgga 3887439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 32365183 - 32365143
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  32365183 tttagtcaaaagtgagttgaatgtaaattgatttatgtttg 32365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 213246 - 213297
Alignment:
Q  339 ttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 40643069 - 40642990
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggac 366  Q
    |||||||||| | |||||||||| |||||| | || ||| | ||| ||  ||||||||||||| ||||||||||||||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgattttggataagagcaagttgaatgtaaagtgatttatgtttggac 40642990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 48548975 - 48549030
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||| |||||||||||||||||| || ||||| | ||| ||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaa 48549030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 1199927 - 1199889
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1199927 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1199889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 20800303 - 20800341
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  20800303 gttaaaagtgagttgaatgtgaattgatttatgtttgga 20800341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 33693134 - 33693088
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    |||||||| |||||||| ||||| ||||||||||||||| |||||||    
T  33693134 gttaaaagcgagttgaacgtaaagtgatttatgtttggatacattca 33693088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 35569228 - 35569266
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  35569228 gttaaaagtgagttgaatgtgaattgatttatgtttgga 35569266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 40352491 - 40352453
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  40352491 gttaaaagtgagtttaatgtaaagtgatttatgtttgga 40352453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 48511008 - 48510970
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48511008 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48510970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 50751256 - 50751290
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||||||||||| ||||||||||||||||||||||    
T  50751256 taaaagtgagttaaatgtaaaatgatttatgtttg 50751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 7524243 - 7524182
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    |||||||||| | || ||||| |||||| |||||||||||||| | ||| ||||||||||||    
T  7524243 taaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaa 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 26253024 - 26253101
Alignment:
Q  284 ataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 361  Q
    |||||||| |||| |||||||||||| |||||| |||| |    |||||| ||||||||| ||||||| |||||||||    
T  26253024 ataaattggttttgaatgaattgattctgtaaaatcgattcggtttaaaaatgagttgaaagtaaaatcatttatgtt 26253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 3819747 - 3819719
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgattta 357  Q
    |||||||||||||||||||||||||||||    
T  3819747 taaaagtgagttgaatgtaaaatgattta 3819719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 18325296 - 18325377
Alignment:
Q  279 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    |||||| |||||| ||||  |||||||| || |||||| | || ||||  |||||||||||||||||||||||| ||| |||||    
T  18325296 gtgacaaaaattggtttt--atgaattggttttgtaaaattgattttacataaaagtgagttgaatgtaaaatggtttctgttt 18325377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 42423142 - 42423202
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 389  Q
    |||||||||||||||| |||| || |||||| ||| |||| |||||||| ||||| |||||    
T  42423142 taaaagtgagttgaatataaagtggtttatgattgaacacgttcacgtaaaagtgggttga 42423202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 47978389 - 47978425
Alignment:
Q  329 taaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  47978389 taaaagtgagttgaatgtaaagtgatttatggttgga 47978425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 15241 - 15320
Alignment:
Q  286 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  15241 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 29923069 - 29922986
Alignment:
Q  290 tgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||||| ||||||||||||||||||| | || |||   || ||||||||||||||| || | ||||||||||||| |||||||    
T  29923069 tgattttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacattca 29922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 2483732 - 2483774
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  2483732 tttagttaaaagtgagttgaatgtgaattgatttatgtttgga 2483774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 2868371 - 2868413
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  2868371 tttagttaaaagtgagttgaatgtaaagtgatttaagtttgga 2868413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 4306636 - 4306598
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttggacacattca 373  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattca 4306598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 22811116 - 22811078
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22811116 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 22811078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 24036660 - 24036627
Alignment:
Q  330 aaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    ||||||||||||||||||||||||||||||||||    
T  24036660 aaaagtgagttgaatgtaaaatgatttatgtttg 24036627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 5465398 - 5465458
Alignment:
Q  302 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    |||||||| |||||| | || ||||| ||||||||| ||||||| ||||||||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgttt 5465458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 6988277 - 6988217
Alignment:
Q  302 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 362  Q
    |||||||| |||||| | || |||| |||||||| |||||||| |||||||||||||||||    
T  6988277 aattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgttt 6988217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 10898736 - 10898672
Alignment:
Q  408 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaat 471  Q
    |||||||| |||||||||  |||||||||||||||||||| || | || ||||||||||||||||    
T  10898736 tcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaat 10898672  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 10957205 - 10957268
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 387  Q
    ||||||||||||||| |||||||| ||||||||||||||| |  ||||| ||||| |||||||||    
T  10957205 tttagttaaaagtgacttgaatgt-aaatgatttatgttttgttacatttacgtacaagtgagtt 10957268  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 28304821 - 28304888
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 390  Q
    ||||||||||| |||||||||||  ||||||||||| |||||| | |||||||||  |||| ||||||    
T  28304821 tttagttaaaaatgagttgaatgggaaatgatttatatttggatatattcacgtaacagtgggttgaa 28304888  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 19784903 - 19784865
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19784903 gttaaaagtgagttgaatgtaaagtggtttatgtttgga 19784865  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 22482279 - 22482241
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22482279 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 35816985 - 35817019
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtt 361  Q
    ||||||||||||||||||||||||| |||||||||    
T  35816985 gttaaaagtgagttgaatgtaaaataatttatgtt 35817019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 38045460 - 38045390
Alignment:
Q  411 agttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaatttgc 480  Q
    ||||| ||||||| || ||||||||||||||| |||| || ||||| ||||||||||||||| || |||||    
T  38045460 agttaaaatcaataccggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaatcaattttgc 38045390  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 10273268 - 10273357
Alignment:
Q  302 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    |||||||| |||||| |  | |||| ||| ||||||||||||| |||||||||||||| ||| | |||||  |||| ||||| |||||||    
T  10273268 aattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatgcttgaatacattttcgtacaagtgggttgaaa 10273357  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 29922640 - 29922575
Alignment:
Q  408 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaata 472  Q
    |||||||| |||||||||  ||||||||||||||| |||| || ||||  ||||||||||||||||    
T  29922640 tcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 40885300 - 40885259
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttggacaca 369  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  40885300 ttaaaagtgagttggatgtgaattgatttatgtttggacaca 40885259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 43152386 - 43152423
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  43152386 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 43152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 14299498 - 14299422
Alignment:
Q  287 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||| ||||| | |||||||||| |||||| | || | ||| ||||||||||||||| ||||| |||||| ||||||    
T  14299498 aatttattttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttg 14299422  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 14671203 - 14671096
Alignment:
Q  280 tgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtaga 379  Q
    ||||| ||| ||||||| |||||||||||| ||| || | || | | | ||||||||| |||||||| || | |||||||||||||  |||||| ||| |    
T  14671203 tgacaaaaaatgattttgaatgaattgattttgtgaaattgattatggctaaaagtgaattgaatgtgaagt-atttatgtttggatgcattcatgtaaa 14671105  T
Q  380 agtgagttg 388  Q
    |||||||||    
T  14671104 agtgagttg 14671096  T

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Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 473
Target Start/End: Original strand, 12378 - 12444
Alignment:
Q  408 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 473  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  12378 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 12444  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 14075 - 14131
Alignment:
Q  335 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 391  Q
    ||||||||| ||||| ||||||||||||||| ||||||| ||  |||||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaa 14131  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 99742 - 99701
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    |||| |||||||||||||||||||||| | ||||||||||||    
T  99742 tttaattaaaagtgagttgaatgtaaattaatttatgtttgg 99701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 99958 - 99918
Alignment:
Q  323 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 363  Q
    |||| |||||||||||||||||||||| | |||||||||||    
T  99958 tttaattaaaagtgagttgaatgtaaattaatttatgtttg 99918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 199394 - 199431
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 364  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  199394 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 199431  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 219728 - 219691
Alignment:
Q  328 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  219728 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 23546 - 23614
Alignment:
Q  327 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaagata 395  Q
    |||||||||||||||||||||||  | |||||||| |||  |||| | ||| |||||||||||| ||||    
T  23546 gttaaaagtgagttgaatgtaaagcggtttatgttaggatgcatttaagtaaaagtgagttgaatgata 23614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 65602 - 65538
Alignment:
Q  301 gaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 365  Q
    ||||||||| ||| || | || ||| ||||||| |||||| |||||||| |||||||||||||||    
T  65602 gaattgattctgtgaaattgattttggttaaaaatgagtttaatgtaaagtgatttatgtttgga 65538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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