View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_low_5 (Length: 424)
Name: NF14532_low_5
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 52393164 - 52392818
Alignment:
| Q |
14 |
atgaacaaaaacaactcacaacaaagcagaagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaagg |
113 |
Q |
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| T |
52393164 |
atgaacaaaaacaactcacaacaaagcagcagacaaaagcccaaaccgtagcacatgactagaaaaatccagaaaacacgatcctttgtttaggaaaagg |
52393065 |
T |
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| Q |
114 |
aaaaaacaatttttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttccccnnnnnnnnnnnnnnnnnttgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
52393064 |
aaaaaacaatttttgttatgttaattaaatttaatactgaatttcctatatttacaatacatcttagaatccgttctcc---ttattattatttttttgg |
52392968 |
T |
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| Q |
214 |
tacagacatttcccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52392967 |
tacagacatttcccttatatgtgttgagtaaatatagaaaaataaataccaaaaccttatggataaattaacattattcaatgcagaattataagtggca |
52392868 |
T |
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| Q |
314 |
aaataaaattagcgcccatataccaaccaaaccaacaattacattcgtgtcacct |
368 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
52392867 |
aaataaaattagcgcccatatacc-----aaccaacaattacattcgggtcacct |
52392818 |
T |
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