View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_low_6 (Length: 356)
Name: NF14532_low_6
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 43246309 - 43245985
Alignment:
| Q |
19 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
118 |
Q |
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| T |
43246309 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
43246210 |
T |
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| Q |
119 |
attaagatgagctatagtgtgaccaataaagtggccactactaaaatttatttgatttttgcattgattaattggtgacttggtgtaataataaataata |
218 |
Q |
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| T |
43246209 |
attaagaagagctatagtgtaaccaataaagtggccactactaaaatttatttgatttttgcattgattaattggtgacttggtgtaataataaataata |
43246110 |
T |
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| Q |
219 |
tcgatatttgtttttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaataaataaaagagctgct--atatttcttaata |
316 |
Q |
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| T |
43246109 |
tcgatatttgtttttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaataaataaaagagctgctatatatttcttaata |
43246010 |
T |
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| Q |
317 |
cttgaaaacatatactctatttttt |
341 |
Q |
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| T |
43246009 |
cttgaaaacatatactctatttttt |
43245985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 8532727 - 8532429
Alignment:
| Q |
19 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
118 |
Q |
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| T |
8532727 |
taggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcatagaatttgaaaccg |
8532628 |
T |
|
| Q |
119 |
attaagatg-----agctata-gtgtgacc--aataaagtggccactactaaaatttatttgat----ttttgcattgattaattggtgacttggtgtaa |
206 |
Q |
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| T |
8532627 |
atcaagatgtatacag-tatatatgtgaccaaaataaagcagcctctactaaaatttatttgatcttaatttgcgttgattaattggtgacttggtgtaa |
8532529 |
T |
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| Q |
207 |
taataaataatatcgatatttgtttttgcttggtattgttat-----ttaagcaaagaatgtaattggttgtttatgaaatggaataaataaaagagctg |
301 |
Q |
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|||||||||| | | || || |||||| ||||||||||||| ||||| ||| |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
8532528 |
taataaataaatttgcta-ttatttttgtttggtattgttatattaattaagaaaaatttgtaattggtagtttatgaaat-gaatgaataaaagagctg |
8532431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 8551493 - 8551391
Alignment:
| Q |
19 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
118 |
Q |
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|||||||||| |||| |||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||| |||||||| | |||| |
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| T |
8551493 |
taggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaatttcaaatgg |
8551394 |
T |
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| Q |
119 |
att |
121 |
Q |
| |
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||| |
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| T |
8551393 |
att |
8551391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 8540997 - 8540896
Alignment:
| Q |
19 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
118 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||| |||||||| ||||| |||||||| | |||| |
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| T |
8540997 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgacagtaaaggttcttgtgtttatgggatgtgcagctatgcctagaatttcaaatgg |
8540898 |
T |
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| Q |
119 |
at |
120 |
Q |
| |
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|| |
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| T |
8540897 |
at |
8540896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 8551353 - 8551272
Alignment:
| Q |
199 |
tggtgtaataataaataatatcgatatttgtttttgcttggtattgttat---ttaagcaaagaatgtaattggttgtttat |
277 |
Q |
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|||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||| | ||||||||||||||||| |
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| T |
8551353 |
tggtgtaataataaataatactgacatttgtttttgtttagtattgttattaattaagcaaaaattgtaattggttgtttat |
8551272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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