View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14532_low_9 (Length: 235)
Name: NF14532_low_9
Description: NF14532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14532_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 52952990 - 52953193
Alignment:
| Q |
16 |
tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttat |
115 |
Q |
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| T |
52952990 |
tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttat |
52953089 |
T |
|
| Q |
116 |
cacaaccaatctttttgctctttatgctttcacttcttctccaaaaaacaaccaaaccgaacaacttcaccaagtacacaaaaacttctctctcatctca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953090 |
cacaaccaatctttttgctctttatgctttcacttcttctccaaaaaacaaccaaaccgaacaacttcaccaagtacacaaaaacttctctctcatctca |
52953189 |
T |
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| Q |
216 |
gaac |
219 |
Q |
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|||| |
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| T |
52953190 |
gaac |
52953193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 31904534 - 31904333
Alignment:
| Q |
18 |
ggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttatca |
117 |
Q |
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| T |
31904534 |
ggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaactcaacactttgttcttcagttgttaacattctcatgatcttatccgttatca |
31904435 |
T |
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| Q |
118 |
caaccaatctttttgctctttatgctttcacttcttctccaaaaaacaaccaaaccgaacaacttcaccaagtacacaaaaacttctctctcatctcaga |
217 |
Q |
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| T |
31904434 |
caaccaatctttttgctctttatgctttcacttcttctccaaaaaacaaccaaaccgaacaacttcatcaagtacacaaaaacttctctctcatctcaga |
31904335 |
T |
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| Q |
218 |
ac |
219 |
Q |
| |
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|| |
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| T |
31904334 |
ac |
31904333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 31673487 - 31673577
Alignment:
| Q |
16 |
tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatctt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31673487 |
tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaactcaacactttgttcttcagttgttaacattctcatgatctt |
31673577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 31922186 - 31922097
Alignment:
| Q |
17 |
gggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatctt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
31922186 |
gggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaactcaacactctgttcttcagttgttaacattctcatgatctt |
31922097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 43071122 - 43071164
Alignment:
| Q |
16 |
tgggttctgtttctttgaaaattggtgatggaacagcaagatt |
58 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43071122 |
tgggttcagtttctttgaaaattggtgatggaacagcaagatt |
43071164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 7759852 - 7759987
Alignment:
| Q |
16 |
tgggttctgtttctttgaaaattggtgatggaacagcaagattcaaaaaatcaacactttgttcttcagctgttaacattctcatgatcttatccgttat |
115 |
Q |
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||||||| ||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || | || || |
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| T |
7759852 |
tgggttcagtttcactgaaaattggagatggaacagcaagattcaaaagagcaacactttgttcttcagctgttaacattctcatgattttctgtgtcat |
7759951 |
T |
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| Q |
116 |
cacaaccaatctttttgctctttatgctttcacttc |
151 |
Q |
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|||||||||||| |||||||| |||||||||||||| |
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| T |
7759952 |
cacaaccaatctctttgctctctatgctttcacttc |
7759987 |
T |
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