View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14533_high_1 (Length: 547)

Name: NF14533_high_1
Description: NF14533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14533_high_1
NF14533_high_1
[»] chr7 (13 HSPs)
chr7 (17-366)||(44727045-44727394)
chr7 (368-539)||(44726584-44726758)
chr7 (488-541)||(9680508-9680561)
chr7 (496-541)||(24815612-24815657)
chr7 (488-539)||(21679725-21679776)
chr7 (502-539)||(7092763-7092800)
chr7 (502-539)||(7349862-7349899)
chr7 (502-539)||(20299123-20299160)
chr7 (502-539)||(28487217-28487254)
chr7 (502-539)||(31156495-31156532)
chr7 (502-539)||(38395954-38395991)
chr7 (502-539)||(7470616-7470653)
chr7 (509-541)||(44011290-44011322)
[»] chr3 (13 HSPs)
chr3 (488-541)||(28100579-28100632)
chr3 (488-539)||(23636695-23636746)
chr3 (488-539)||(25635090-25635141)
chr3 (488-541)||(890289-890342)
chr3 (488-541)||(43421952-43422005)
chr3 (488-539)||(28137812-28137863)
chr3 (488-539)||(3306486-3306537)
chr3 (503-541)||(14634699-14634737)
chr3 (502-535)||(1619199-1619232)
chr3 (502-541)||(42991919-42991958)
chr3 (502-539)||(457918-457955)
chr3 (509-541)||(4386466-4386498)
chr3 (509-541)||(15824151-15824183)
[»] chr6 (6 HSPs)
chr6 (488-541)||(3396061-3396114)
chr6 (488-539)||(3630403-3630454)
chr6 (495-538)||(28038244-28038287)
chr6 (488-535)||(26944898-26944945)
chr6 (507-539)||(19696243-19696275)
chr6 (488-541)||(11138125-11138178)
[»] chr1 (12 HSPs)
chr1 (488-539)||(50077174-50077225)
chr1 (488-539)||(8347812-8347863)
chr1 (488-539)||(31423416-31423467)
chr1 (488-537)||(8954347-8954396)
chr1 (488-537)||(25249035-25249084)
chr1 (488-539)||(16430792-16430842)
chr1 (503-541)||(25127561-25127599)
chr1 (502-539)||(27337527-27337564)
chr1 (502-539)||(31736110-31736147)
chr1 (503-539)||(155396-155432)
chr1 (503-539)||(13125992-13126028)
chr1 (504-539)||(6997182-6997217)
[»] chr4 (10 HSPs)
chr4 (488-541)||(36380127-36380180)
chr4 (489-536)||(18535319-18535366)
chr4 (488-539)||(47564466-47564517)
chr4 (488-530)||(27498942-27498984)
chr4 (496-541)||(12396394-12396439)
chr4 (496-541)||(12401336-12401381)
chr4 (489-539)||(16455017-16455067)
chr4 (502-541)||(14788016-14788055)
chr4 (502-539)||(5100711-5100748)
chr4 (509-541)||(3792451-3792483)
[»] chr5 (4 HSPs)
chr5 (488-536)||(20044728-20044776)
chr5 (502-541)||(27912185-27912224)
chr5 (502-539)||(18468666-18468703)
chr5 (502-539)||(26098836-26098873)
[»] chr8 (5 HSPs)
chr8 (488-539)||(21482091-21482142)
chr8 (488-540)||(31574230-31574282)
chr8 (502-541)||(41384459-41384498)
chr8 (509-541)||(17849511-17849543)
chr8 (509-539)||(26268787-26268817)
[»] chr2 (3 HSPs)
chr2 (488-538)||(31733265-31733315)
chr2 (502-539)||(35216179-35216216)
chr2 (509-541)||(13828840-13828872)
[»] scaffold1674 (1 HSPs)
scaffold1674 (502-539)||(90-127)
[»] scaffold0005 (1 HSPs)
scaffold0005 (502-541)||(51675-51714)
[»] scaffold0011 (1 HSPs)
scaffold0011 (507-541)||(35547-35581)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 44727394 - 44727045
Alignment:
Q  17 aaaagtttggagcaaaataaacaaattccccgacaaaaccgagttgaagccaagccacttgaataccacataccaaacagtgcccgaaaaaccacattta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727394 aaaagtttggagcaaaataaacaaattccccgacaaaaccgagttgaagccaagccacttgaataccacataccaaacagtgcccgaaaaaccacattta 44727295  T
Q  117 gcaaacaaatgttcttctgtttcttggacatcattgcaacacactcaactcggaatccaactgttgccgaacacccctctcctccctaagttgcaccttg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727294 gcaaacaaatgttcttctgtttcttggacatcattgcaacacacacaactcggaatccaactgttgccgaacacccctctcctccctaagttgcaccttg 44727195  T
Q  217 tccgtaggcgtgataaaagcaattgtcatgaaaaaatcaccacctttgaaggagtaaattgcataaaagcaattatcccacaacaaagcaaaaagatcta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44727194 tccgtaggcgtgataaaagcaattgtcatgaaaaaatcaccacctttgaaggagtaaattgcataaaagcaattatcccacagcaaagcaaaaagatcta 44727095  T
Q  317 caaattccaccgccaccaaggaaggtgataacaaaatattgctaaggtag 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727094 caaattccaccgccaccaaggaaggtgataacaaaatattgctaaggtag 44727045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 368 - 539
Target Start/End: Complemental strand, 44726758 - 44726584
Alignment:
Q  368 aataaactgcacattagcagaaaatatacctttgaatatatat---tttttaatttatcacttaaacaatgttatttacgatcaagaatttgaattacat 464  Q
    |||||||||||||||| |||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  44726758 aataaactgcacattaacagaaaatatacctttcaatatatatatatttttaatttatcacttaaacaatgttatttacaataaagaatttgaattacat 44726659  T
Q  465 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44726658 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 44726584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 9680561 - 9680508
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9680561 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 9680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 24815612 - 24815657
Alignment:
Q  496 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24815612 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 24815657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 21679776 - 21679725
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21679776 tttgaggcactttcacaataatctccaccttgactttaaattagtgatgatg 21679725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 7092763 - 7092800
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7092763 acaacattctccaccttgactctaaattagtgatgatg 7092800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 7349862 - 7349899
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7349862 acaacattctccaccttgactctaaattagtgatgatg 7349899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 20299160 - 20299123
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20299160 acaacattctccaccttgactctaaattagtgatgatg 20299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 28487254 - 28487217
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28487254 acaacattctccaccttgactctaaattagtgatgatg 28487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 31156495 - 31156532
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31156495 acaacattctccaccttgactctaaattagtgatgatg 31156532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 38395991 - 38395954
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38395991 acaacattctccaccttgactctaaattagtgatgatg 38395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 7470616 - 7470653
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  7470616 acaacattctccaccttgactctaaatttgtgatgatg 7470653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Original strand, 44011290 - 44011322
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||| |||||||||||||    
T  44011290 tctccaccttgactctaaaatagtgatgatgtc 44011322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 28100579 - 28100632
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28100579 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 28100632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 23636746 - 23636695
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23636746 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 23636695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 25635141 - 25635090
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25635141 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 25635090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 890289 - 890342
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  890289 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 890342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 43421952 - 43422005
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  43421952 tttgaggcactttcacaacaatttccaccttgactccaaattagtgatgatgtc 43422005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 28137812 - 28137863
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28137812 tttgaggcactttcacaacaatctccaccttgactttaaattaatgatgatg 28137863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 3306537 - 3306486
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  3306537 tttgagtcactttcacaacattctccaccttaactctaaattagtgatgatg 3306486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 14634699 - 14634737
Alignment:
Q  503 caacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14634699 caacaatctccaccttgactctaaattagtgatgatgtc 14634737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 535
Target Start/End: Original strand, 1619199 - 1619232
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgat 535  Q
    ||||||||||||||||||||||||||||||||||    
T  1619199 acaacaatctccaccttgactctaaattagtgat 1619232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 42991958 - 42991919
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  42991958 acaacattcttcaccttgactctaaattagtgatgatgtc 42991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 457955 - 457918
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  457955 acaacattctccaccttgactctaaattagtaatgatg 457918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Complemental strand, 4386498 - 4386466
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||| |||||||||||    
T  4386498 tctccaccttgactctaaattggtgatgatgtc 4386466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Original strand, 15824151 - 15824183
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||| |||||||||||||||||||||||||    
T  15824151 tctccacattgactctaaattagtgatgatgtc 15824183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 3396114 - 3396061
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3396114 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 3396061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 3630403 - 3630454
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3630403 tttgaggcactttcacaacaatctccaccttgactcaaaattagtgatgatg 3630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 28038244 - 28038287
Alignment:
Q  495 cactttcacaacaatctccaccttgactctaaattagtgatgat 538  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28038244 cactttcacaacaatctccaccttgactttaaattagtgatgat 28038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 26944945 - 26944898
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgat 535  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  26944945 tttgagtcactttcacaacaatttccaccttgtctctaaattagtgat 26944898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 19696275 - 19696243
Alignment:
Q  507 aatctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||||||||||||||||||    
T  19696275 aatctccaccttgactctaaattagtgatgatg 19696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 11138178 - 11138125
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||  |||||| |||||||||| |||||||||| |||||||||||    
T  11138178 tttgagtcacttctacaacattctccaccttaactctaaatttgtgatgatgtc 11138125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 50077174 - 50077225
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50077174 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 50077225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 8347812 - 8347863
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8347812 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 8347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 31423416 - 31423467
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  31423416 tttgagtcactttcacaacaatcttcaccttgactctaaattagtgatgatg 31423467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 537
Target Start/End: Complemental strand, 8954396 - 8954347
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 537  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  8954396 tttgagtcactttcacaacaatttccaccttgactcttaattagtgatga 8954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 25249035 - 25249084
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 537  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  25249035 tttgaggcactatcacaacaatctcctccttgaccctaaattagtgatga 25249084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 16430842 - 16430792
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  16430842 tttgagtcactttcacaacaatctccactttgactct-aattagtgatgatg 16430792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 541
Target Start/End: Complemental strand, 25127599 - 25127561
Alignment:
Q  503 caacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  25127599 caacaatctccaccttgactctaaattagttatgatgtc 25127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 27337527 - 27337564
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27337527 acaacattctccaccttgactctaaattagtgatgatg 27337564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 31736110 - 31736147
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31736110 acaacattctccaccttgactctaaattagtgatgatg 31736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 155432 - 155396
Alignment:
Q  503 caacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||||||||||| ||||||||||    
T  155432 caacaatctccaccttgactctaaataagtgatgatg 155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 13125992 - 13126028
Alignment:
Q  503 caacaatctccaccttgactctaaattagtgatgatg 539  Q
    ||||||||||||||||||| |||||||||||||||||    
T  13125992 caacaatctccaccttgacactaaattagtgatgatg 13126028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 539
Target Start/End: Complemental strand, 6997217 - 6997182
Alignment:
Q  504 aacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||| |||||||||||||||||||||||||||||||    
T  6997217 aacattctccaccttgactctaaattagtgatgatg 6997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 36380180 - 36380127
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36380180 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 36380127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 536
Target Start/End: Original strand, 18535319 - 18535366
Alignment:
Q  489 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 536  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18535319 ttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 18535366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 47564517 - 47564466
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  47564517 tttgaggcactttcacaacaatctccaccttgactctaagttattgatgatg 47564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 27498984 - 27498942
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaatta 530  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27498984 tttgaggcactttcacaacaatctccaccttgactctaaatta 27498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12396394 - 12396439
Alignment:
Q  496 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12396394 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12401336 - 12401381
Alignment:
Q  496 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12401336 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12401381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 539
Target Start/End: Complemental strand, 16455067 - 16455017
Alignment:
Q  489 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||||||||    
T  16455067 ttgagtcacttctacaacaatctccaccttgactccaaattagtgatgatg 16455017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 541
Target Start/End: Original strand, 14788016 - 14788055
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  14788016 acaacattctccaccttgactctaaattagcgatgatgtc 14788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 5100748 - 5100711
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  5100748 acaacattctccaccttgactctaaattagcgatgatg 5100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Complemental strand, 3792483 - 3792451
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||||||| |||||||    
T  3792483 tctccaccttgactctaaattagtggtgatgtc 3792451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 20044776 - 20044728
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 536  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20044776 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 20044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 27912224 - 27912185
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  27912224 acaacattctccaccttgactctaaattagtgatgatgtc 27912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 18468703 - 18468666
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18468703 acaacattctccaccttgactctaaattagtgatgatg 18468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 26098836 - 26098873
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26098836 acaacattctccaccttgactctaaattagtgatgatg 26098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 21482142 - 21482091
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21482142 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 21482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 31574230 - 31574282
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgt 540  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  31574230 tttgagtcactttcacaacattcttcaccttgactctaaattagtaatgatgt 31574282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 41384498 - 41384459
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  41384498 acaacattctccaccttgactctaaattagtgatgatgtc 41384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 541
Target Start/End: Complemental strand, 17849543 - 17849511
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||||||||||||||||||||||||||||||    
T  17849543 tctccaccttgactctaaattagtgatgatgtc 17849511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 26268787 - 26268817
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatg 539  Q
    |||||||||||||||||||||||||||||||    
T  26268787 tctccaccttgactctaaattagtgatgatg 26268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 31733265 - 31733315
Alignment:
Q  488 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgat 538  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31733265 tttgagtcactttcacaacaatctccaccttgactctaaactagtgatgat 31733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 35216179 - 35216216
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35216179 acaacattctccaccttgactctaaattagtgatgatg 35216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 541
Target Start/End: Original strand, 13828840 - 13828872
Alignment:
Q  509 tctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||||||| |||||||||||    
T  13828840 tctccaccttgactctaaatttgtgatgatgtc 13828872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 90 - 127
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatg 539  Q
    |||||| |||||||||||||||||||||||||||||||    
T  90 acaacattctccaccttgactctaaattagtgatgatg 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 51714 - 51675
Alignment:
Q  502 acaacaatctccaccttgactctaaattagtgatgatgtc 541  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  51714 acaacattctccaccttgactctaaattagcgatgatgtc 51675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 541
Target Start/End: Complemental strand, 35581 - 35547
Alignment:
Q  507 aatctccaccttgactctaaattagtgatgatgtc 541  Q
    ||||||||||||||||| |||||||||||||||||    
T  35581 aatctccaccttgactccaaattagtgatgatgtc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University