View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14533_high_9 (Length: 237)

Name: NF14533_high_9
Description: NF14533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14533_high_9
NF14533_high_9
[»] chr3 (2 HSPs)
chr3 (1-222)||(32412603-32412824)
chr3 (47-120)||(6907536-6907609)
[»] chr8 (7 HSPs)
chr8 (39-151)||(3408998-3409110)
chr8 (41-120)||(3288135-3288214)
chr8 (25-127)||(3268890-3268992)
chr8 (25-127)||(13807208-13807310)
chr8 (3-98)||(3326625-3326720)
chr8 (52-193)||(3400311-3400452)
chr8 (52-120)||(7166358-7166426)
[»] chr2 (1 HSPs)
chr2 (25-120)||(14768582-14768677)
[»] chr5 (1 HSPs)
chr5 (39-120)||(30416251-30416332)
[»] chr7 (1 HSPs)
chr7 (53-150)||(8373419-8373516)
[»] chr6 (1 HSPs)
chr6 (45-150)||(31060516-31060621)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32412603 - 32412824
Alignment:
Q  1 tctccttcattgtacaaacatgtgcaactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412603 tctccttcattgtacaaacatgtgcaactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacg 32412702  T
Q  101 atttccacatagggcttttatttgctcaaacttactcacatcatccagtataaccaggactgttttccctcgaagtcttttctcgatcatagtagtcccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412703 atttccacatagggcttttatttgctcaaacttactcacatcatccagtataaccaggactgttttccctcgaagtcttttctcgatcatagtagtcccc 32412802  T
Q  201 gatgtaatactatgtatcttct 222  Q
    ||||||||||||||||||||||    
T  32412803 gatgtaatactatgtatcttct 32412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 6907536 - 6907609
Alignment:
Q  47 gtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggctttta 120  Q
    |||| ||||||||||||||||||||| ||||||||||  ||| || ||||||  |||||||||||| |||||||    
T  6907536 gtgtgcatctctggttgtaacaattagtacacttcccaaacctaaacatttataatttccacatagtgctttta 6907609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 3408998 - 3409110
Alignment:
Q  39 ttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttgctcaaacttactca 138  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| | ||||||  ||||| ||||||| ||||||||||||||||||| ||| | | |||    
T  3408998 ttaagtatgtgtacatctctggttgtaacaattaacacacttccagcaccaaaaaatttatgatttccgcatagggcttttatttgctgaaaatcagtca 3409097  T
Q  139 catcatccagtat 151  Q
    ||||||| |||||    
T  3409098 catcatcaagtat 3409110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 3288135 - 3288214
Alignment:
Q  41 aagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggctttta 120  Q
    |||||||||||||||||| ||||||| ||||||||||||||| | ||||||  ||| | ||||| |||||||||||||||    
T  3288135 aagtaggtgtacatctctagttgtaataattaatacacttcctggaccaaagaattcaggatttgcacatagggctttta 3288214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 3268890 - 3268992
Alignment:
Q  25 caactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttg 124  Q
    |||||||||| || ||||||| | ||||||| || | ||||||||| ||||||||||||| |||||| ||||||| ||||  ||||||||||| || |||    
T  3268890 caactttaagtaacttaagtatgcgtacatccctagatgtaacaatcaatacacttcccgcaccaaaacatttacaatttatacatagggcttctacttg 3268989  T
Q  125 ctc 127  Q
    |||    
T  3268990 ctc 3268992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 13807310 - 13807208
Alignment:
Q  25 caactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttg 124  Q
    |||||| ||| || ||||||| | ||||||| |||| ||||||||| |||||||| || |||||||| |||||| | |||||||||||||| |||| |||    
T  13807310 caacttcaagtaacttaagtatgcgtacatccctggatgtaacaatcaatacactcccggtaccaaaacatttatgttttccacatagggcatttacttg 13807211  T
Q  125 ctc 127  Q
    |||    
T  13807210 ctc 13807208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 3326625 - 3326720
Alignment:
Q  3 tccttcattgtacaaacatgtgcaactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccattta 98  Q
    |||||||||||||| ||||   |||| ||||  || ||||| | | ||||||||||||||||||  |||||||||||||||| ||||||| |||||    
T  3326625 tccttcattgtacatacatagtcaaccttaactaaattaagcacgcgtacatctctggttgtaattattaatacacttcccggaccaaacaattta 3326720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 3400311 - 3400452
Alignment:
Q  52 catctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttgctcaaacttactcacatcatccagtat 151  Q
    ||||||| ||||||| ||| ||||||||||||| ||| ||| | ||| ||| | |||| |||  ||||| ||||||| |  |  |||||||||| |||||    
T  3400311 catctctagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacaggttttttaattgctcagatgtggtcacatcatcaagtat 3400410  T
Q  152 aaccaggactgttttccctcgaagtcttttctcgatcatagt 193  Q
     || |  |||||||  ||||||||||||||||| ||| ||||    
T  3400411 gacaaaaactgtttgtcctcgaagtcttttctcaatcttagt 3400452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 7166358 - 7166426
Alignment:
Q  52 catctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggctttta 120  Q
    ||||||| ||||||||||| || |||||||||| ||||||  || || ||||||||||||  |||||||    
T  7166358 catctctagttgtaacaataaagacacttcccggaccaaataatctaggatttccacataacgctttta 7166426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 14768582 - 14768677
Alignment:
Q  25 caactttaagcaatttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggctttta 120  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||  |||||| ||||| ||||||||||    
T  14768582 caacttcaagtaaattaagaaggtgtacatctctggttgtaacaattattacacttccagtaccaaaccatgcacgattgccacacagggctttta 14768677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 30416332 - 30416251
Alignment:
Q  39 ttaagtaggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggctttta 120  Q
    ||||||| |||| |||| ||| |||||||||||||||||||||| | ||||||||| |||||| || || ||||||||||||    
T  30416332 ttaagtatgtgtgcatccctgcttgtaacaattaatacacttcctgcaccaaaccacttacgactttcatatagggctttta 30416251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 8373419 - 8373516
Alignment:
Q  53 atctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttgctcaaacttactcacatcatccagta 150  Q
    |||||| ||||||| ||| ||||||||||| | ||||||| | ||| |||||||||  || ||||||| ||||||| ||||  |||||||||| ||||    
T  8373419 atctctagttgtaataatcaatacacttcctgaaccaaacaacttaggatttccacccagagcttttaattgctcagacttggtcacatcatcaagta 8373516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 31060516 - 31060621
Alignment:
Q  45 aggtgtacatctctggttgtaacaattaatacacttcccgtaccaaaccatttacgatttccacatagggcttttatttgctcaaacttactcacatcat 144  Q
    |||||| ||||||||||||||| ||| |||||| ||| || ||||||  | |||| |||| |||| |||||||||| || | |||||||  |||||||||    
T  31060516 aggtgttcatctctggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatttcccaaacttggtcacatcat 31060615  T
Q  145 ccagta 150  Q
    | ||||    
T  31060616 caagta 31060621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University