View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14533_low_3 (Length: 469)

Name: NF14533_low_3
Description: NF14533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14533_low_3
NF14533_low_3
[»] chr1 (3 HSPs)
chr1 (1-454)||(9798283-9798737)
chr1 (190-349)||(49642439-49642598)
chr1 (399-448)||(49642865-49642914)
[»] chr8 (2 HSPs)
chr8 (190-349)||(15191684-15191843)
chr8 (399-448)||(15191368-15191417)
[»] scaffold0164 (4 HSPs)
scaffold0164 (190-275)||(18131-18216)
scaffold0164 (190-349)||(28511-28670)
scaffold0164 (399-448)||(18557-18606)
scaffold0164 (399-448)||(28937-28986)
[»] chr3 (4 HSPs)
chr3 (190-349)||(53976702-53976861)
chr3 (202-275)||(31196533-31196606)
chr3 (202-275)||(52771707-52771780)
chr3 (399-448)||(53976386-53976435)
[»] chr7 (1 HSPs)
chr7 (202-275)||(16255197-16255270)
[»] chr6 (1 HSPs)
chr6 (202-275)||(26132117-26132190)
[»] chr4 (2 HSPs)
chr4 (190-349)||(18252532-18252691)
chr4 (202-275)||(13986667-13986740)
[»] scaffold0014 (1 HSPs)
scaffold0014 (202-275)||(97177-97250)
[»] scaffold0013 (1 HSPs)
scaffold0013 (202-275)||(250294-250367)
[»] scaffold0061 (2 HSPs)
scaffold0061 (399-445)||(13861-13907)
scaffold0061 (399-445)||(22919-22965)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 9798283 - 9798737
Alignment:
Q  1 ttctttccaaaatttggatgaaaacaatggttcccataacaagtttcaatggtatgcccatttctaccacataaagatcaggtatgcgtctgatttgagg 100  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  9798283 ttctttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacaaaaagaacaggtatgcgtctgatttgagg 9798382  T
Q  101 ggaatgaaggaccattgccacgtcccctaccttgtgatctcccataagaagcagcatttatgagaatttcggactcataaactggtgtagaaatcttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9798383 ggaatgaaggaccattgccacgtcccctaccttgtgatttcccataagaagcagcatttatgagaattttggactcataaactggtgtagaaatcttgaa 9798482  T
Q  201 ctgtctctcatgttgcaaaaccatggaaaaga-tcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaaaggaatcatt 299  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798483 ctgtctctcatgttgcaaaaccatggaaaaaaatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaaaggaatcatt 9798582  T
Q  300 taaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttagaattactcaaaccagtaacacaaacacaacggtgagggcatgttgcaccg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798583 taaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttagaattactcaaaccagtaacacaaacacaacggtgagggcatgttgcaccg 9798682  T
Q  400 aattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaact 454  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9798683 aattcatgatccacgaatgaataagcatgttgcactgattccaagccttaaaact 9798737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 349
Target Start/End: Original strand, 49642439 - 49642598
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 289  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  49642439 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 49642538  T
Q  290 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 349  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  49642539 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 49642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 49642865 - 49642914
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagcctt 448  Q
    |||||||| ||||| ||||| | |||||||||||| ||||||||||||||    
T  49642865 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagcctt 49642914  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 349
Target Start/End: Complemental strand, 15191843 - 15191684
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 289  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| ||||| | || ||  ||||    
T  15191843 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaataaaatctgagaacgaaccagatcaa 15191744  T
Q  290 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 349  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  15191743 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 15191684  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 15191417 - 15191368
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagcctt 448  Q
    |||||||| ||||| ||||| | |||||||||||| ||||||||||||||    
T  15191417 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagcctt 15191368  T

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Target: scaffold0164 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 18131 - 18216
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| |||||    
T  18131 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaataaaatctgaga 18216  T

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Target: scaffold0164; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 349
Target Start/End: Original strand, 28511 - 28670
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 289  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  28511 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccagatcaa 28610  T
Q  290 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 349  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  28611 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 28670  T

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Target: scaffold0164; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 18557 - 18606
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagcctt 448  Q
    |||||||| ||||| ||||| | |||||||||||| ||||||||||||||    
T  18557 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagcctt 18606  T

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Target: scaffold0164; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 28937 - 28986
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagcctt 448  Q
    |||||||| ||||| ||||| | |||||||||||| ||||||||||||||    
T  28937 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagcctt 28986  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 349
Target Start/End: Complemental strand, 53976861 - 53976702
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 289  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  53976861 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 53976762  T
Q  290 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 349  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  53976761 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 53976702  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 31196533 - 31196606
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  31196533 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 31196606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 52771780 - 52771707
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  52771780 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 52771707  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 53976435 - 53976386
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagcctt 448  Q
    |||||||| ||||| ||||| | |||||||||||| ||||||||||||||    
T  53976435 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagcctt 53976386  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 16255270 - 16255197
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  16255270 tgtctttcatgctgcaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 16255197  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 26132190 - 26132117
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  26132190 tgtctttcatgctgcaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 26132117  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 349
Target Start/End: Complemental strand, 18252691 - 18252532
Alignment:
Q  190 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 289  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| || | ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  18252691 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattcatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 18252592  T
Q  290 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 349  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  18252591 acgaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 18252532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 13986740 - 13986667
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  13986740 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 13986667  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 97177 - 97250
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  97177 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 97250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 250294 - 250367
Alignment:
Q  202 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 275  Q
    ||||| ||||| || || ||||| ||||| || ||||||||||| |||||||||||||||||||| ||||||||    
T  250294 tgtctttcatgctgaaataccattgaaaaaatattgttgagagttggtaaagggttcatcaacaagatttgaga 250367  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 13861 - 13907
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 445  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  13861 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 13907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 22919 - 22965
Alignment:
Q  399 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 445  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  22919 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 22965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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