View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14533_low_6 (Length: 309)
Name: NF14533_low_6
Description: NF14533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14533_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 10066003 - 10065721
Alignment:
| Q |
9 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10066003 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
10065904 |
T |
|
| Q |
109 |
gcttagatttacttaaaaaagtgtgtaacatacagagtaatctcatctttcacttgattttttctttgactacttaactatacttgtttacatgtgatga |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10065903 |
gcttagatttacttaaaaaagtgtgtatcatacagagtaatctcatctttcacttgattttttctttaactacttaactatacttgtttacatgtgatga |
10065804 |
T |
|
| Q |
209 |
taggtgccaattttcggcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaa |
291 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10065803 |
taggtgccaattttcagcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaa |
10065721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 48465865 - 48465987
Alignment:
| Q |
9 |
tatgaacaatacaaatggcaagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatcttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | | ||||||| |
|
|
| T |
48465865 |
tatgaacaatacaaatggcaagaaaatagaggtgttgaagaagagactttaattcacaacctccctaaagatctcagaagagacataaagcgtcatcttt |
48465964 |
T |
|
| Q |
109 |
gcttagatttacttaaaaaagtg |
131 |
Q |
| |
|
|||||| |||| | ||||||||| |
|
|
| T |
48465965 |
gcttagctttagtaaaaaaagtg |
48465987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 48466125 - 48466174
Alignment:
| Q |
242 |
ttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaa |
291 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || || ||||| ||||| |
|
|
| T |
48466125 |
ttgttggatgcaatgtgtgatagactgaagccagttctgtatacagagaa |
48466174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University