View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14533_low_7 (Length: 243)

Name: NF14533_low_7
Description: NF14533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14533_low_7
NF14533_low_7
[»] chr3 (2 HSPs)
chr3 (1-226)||(32412285-32412510)
chr3 (6-218)||(6907180-6907392)
[»] chr8 (12 HSPs)
chr8 (1-226)||(7165989-7166214)
chr8 (1-215)||(3326316-3326530)
chr8 (3-226)||(3408642-3408865)
chr8 (1-218)||(3263858-3264075)
chr8 (1-218)||(3268556-3268773)
chr8 (1-215)||(3313380-3313594)
chr8 (76-218)||(3287785-3287927)
chr8 (1-206)||(13786168-13786373)
chr8 (1-203)||(31174381-31174583)
chr8 (1-215)||(3392919-3393133)
chr8 (1-215)||(3362750-3362964)
chr8 (13-203)||(3399965-3400155)
[»] chr2 (1 HSPs)
chr2 (1-224)||(14768242-14768465)
[»] chr5 (4 HSPs)
chr5 (43-218)||(30416505-30416680)
chr5 (112-215)||(15801625-15801728)
chr5 (128-215)||(12596389-12596476)
chr5 (136-203)||(20810772-20810839)
[»] scaffold0468 (1 HSPs)
scaffold0468 (6-217)||(7587-7798)
[»] chr7 (2 HSPs)
chr7 (15-203)||(8373075-8373263)
chr7 (103-206)||(36215342-36215445)
[»] chr6 (7 HSPs)
chr6 (103-206)||(5356066-5356169)
chr6 (72-206)||(5068524-5068658)
chr6 (72-206)||(5424171-5424305)
chr6 (94-165)||(5175306-5175377)
chr6 (94-165)||(5277133-5277204)
chr6 (103-164)||(5104364-5104425)
chr6 (103-192)||(5133369-5133458)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32412510 - 32412285
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412510 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 32412411  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32412410 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 32412311  T
Q  201 ctttatcggcaaggacagggcctatg 226  Q
    ||||||||||||||||||||||||||    
T  32412310 ctttatcggcaaggacagggcctatg 32412285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 6907392 - 6907180
Alignment:
Q  6 ttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagaga 105  Q
    ||||||||||||||| ||  | ||| ||||| |||| ||||||||||||| || ||||||||||  |||||||| ||||||  | |||||  |||| | |    
T  6907392 ttactgtggaggattacccttggctgttgaagtcctcggatcttacttatttgaaaggacaaaagaagaatggaaaagtgtgctatcaaagttagaaaaa 6907293  T
Q  106 attcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttcttta 205  Q
    |||||  ||||  |||| ||||||||| | | |||||||||||| ||||| |  ||||| |   | |||| ||||||||||||  |||||| ||||||||    
T  6907292 attccccatgaagaagtgcaagagaaattgaaaataagctatgatggtttgacagatgacacaaagaaggctatatttcttgatgtatgttgtttcttta 6907193  T
Q  206 tcggcaaggacag 218  Q
    |||||||||||||    
T  6907192 tcggcaaggacag 6907180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7166214 - 7165989
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    ||||| || ||||||||||| ||||| ||||||||| || | || ||||||||||| || |||||||||  |||||||  ||||||| | |  ||| |||    
T  7166214 gttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgtactcttgaaattag 7166115  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    |||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||    
T  7166114 agagaattcccaatgatcaagtgcaagagaaactgagaataagctatgacggtttaaaggatgatatggcaaaggatatatttcttgatatatgttgttt 7166015  T
Q  201 ctttatcggcaaggacagggcctatg 226  Q
    ||||||||||||||| || |||||||    
T  7166014 ctttatcggcaaggatagagcctatg 7165989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3326530 - 3326316
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||||||| ||||||||||| ||| ||||||||||| ||||||| || ||||||||||  |||||||||  |||||||| ||||||| | |  ||| |||    
T  3326530 gttgcttattgtggaggattaccagttgctcttgaagtccttggttcatacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattag 3326431  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    |||||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3326430 agagaattcccaatgatcaagtgcaagagaaactgagaattagctacgatggtttaaaggatgatatggaaaaagatatatttcttgacatatgttgttt 3326331  T
Q  201 ctttatcggcaagga 215  Q
    |||||| ||||||||    
T  3326330 ctttataggcaagga 3326316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 3408865 - 3408642
Alignment:
Q  3 tgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagag 102  Q
    |||||| |||||||| || ||||| ||||||||| |||||||||| ||||||| ||  |||||||||  |||||||| ||| ||| | |||||  |||||    
T  3408865 tgcttattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggataagcgtactatcaaagttagag 3408766  T
Q  103 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 202  Q
    |||||||| ||||| ||||| || ||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  3408765 agaattcccaatgatcaagtgcacgagaagctgagaataagctatgatggtttaaaggatgatatggtaaaggatatatttcttgacatttgttgtttct 3408666  T
Q  203 ttatcggcaaggacagggcctatg 226  Q
    |||| || ||||||||||||||||    
T  3408665 ttattggtaaggacagggcctatg 3408642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3264075 - 3263858
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||||||| ||  ||||||| ||||| ||||| ||| |||| || ||||| || ||||  |||||||||  |||||||  |||| || | |||||| |||    
T  3264075 gttgcttattgcagaggattaccactggctctggaagtcctaggttcttagttgtatgagaggacaaaagaagaatgggaaagtatactctcaaaattag 3263976  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    |||||||||| ||||| ||||| |||||||| || |||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  3263975 agagaattcccaatgatcaagtgcaagagaagctgagaataagttacgatggtttaaaggatggtatggaaaaggatatatttcttgacatatgttgttt 3263876  T
Q  201 ctttatcggcaaggacag 218  Q
    |||||||||||| |||||    
T  3263875 ctttatcggcaaagacag 3263858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3268773 - 3268556
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||| ||||||| ||||||| ||||| ||||||||| || |||||||||||||   ||  ||||||| |  |||||||| ||||||||| |||||  |||    
T  3268773 gttgtttactgtagaggattaccactggctcttgaagtcattggatcttacttgcgtgacaggacaatacaagaatggataagtgtattatcaaagttag 3268674  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    ||||||| ||  ||||  |||| || ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||| |||    
T  3268673 agagaatacccgatgataaagtgcatgagaaactaagaataagctatgatggtttaaagaatgatacagaaaaggatatatttcttgacatatgttgttt 3268574  T
Q  201 ctttatcggcaaggacag 218  Q
    |||||| || ||||||||    
T  3268573 ctttattggtaaggacag 3268556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3313380 - 3313594
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    ||||| || ||||| ||| ||||||| ||||||||| |||||||||||||||| |     |||| ||||  ||| |||   |||||||| ||||| ||||    
T  3313380 gttgcctattgtggtggactgccactagctcttgaagtccttggatcttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctag 3313479  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    | |  || |||||||| ||| |||| |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||  | |||| |||    
T  3313480 aaaagatacctaatgatcaaatacatgagaaactaaaaataagctttgacggtttaagggatcatatggaaaaggatatatttcttgatgtgtgttgttt 3313579  T
Q  201 ctttatcggcaagga 215  Q
    ||||||||| |||||    
T  3313580 ctttatcggtaagga 3313594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 3287927 - 3287785
Alignment:
Q  76 tggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaagg 175  Q
    |||| ||||||||| ||||| | | ||| |||||| ||| | ||| | ||||| ||||| |||||||||||||| || |||||  | |||||||||||||    
T  3287927 tggataagtgtattctcaaatccaaagacaattcccaatcatcaaatccaagaaaaactgagaataagctatgatgggttaaatcaagatatggaaaagg 3287828  T
Q  176 atatatttcttgacatatgttttttctttatcggcaaggacag 218  Q
    |||||||||||||||| |||| ||||||||| || ||||||||    
T  3287827 atatatttcttgacatttgttgtttctttattggtaaggacag 3287785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13786168 - 13786373
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||||||| ||||||||||| ||||| |||||||||||| |||| |||   ||| ||   |||||||||  |||||||| ||||||| |||||||| | |    
T  13786168 gttgcttattgtggaggattaccactggctcttgaaatcattgggtctatgttacattacaggacaaaacaagaatggagaagtgtactgtcaaaatttg 13786267  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    ||| ||||||  || | | | | ||  ||| ||| | |||||| ||||| ||||||| ||||||||||| ||||| | |||||||||||||||||| |||    
T  13786268 agaaaattccccattatctaatgcagcagatactgaaaataagttatgatggtttaatggatgatatggtaaaggctgtatttcttgacatatgttgttt 13786367  T
Q  201 ctttat 206  Q
    ||||||    
T  13786368 ctttat 13786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 31174381 - 31174583
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||||||| || |||||||| ||| | ||||||||| ||||||||  ||||||||     |||| ||||  |||||||| ||||| | | |||||| |||    
T  31174381 gttgcttattgcggaggattaccattggctcttgaagtccttggaagttacttatcaatgaggaaaaaactagaatggaaaagtgcactatcaaaattag 31174480  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    ||| |||||| ||  | ||||| ||| ||||||| ||||| ||||| ||||| ||| | ||| |||  |||||||||||||||||||||||||||| |||    
T  31174481 agaaaattcccaacaatcaagtgcaacagaaactgagaatcagctacgacggcttagaagattatactgaaaaggatatatttcttgacatatgttgttt 31174580  T
Q  201 ctt 203  Q
    |||    
T  31174581 ctt 31174583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3393133 - 3392919
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatgga-aggacaaaaagagaatggacaagtgtattgtcaaaacta 99  Q
    ||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||||| || | |||| ||||  ||| |||   |||||||| ||||| ||     
T  3393133 gttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttat-tgaagaggagaaaacaagagtggcagagtgtattatcaaagctt 3393035  T
Q  100 gagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttt 199  Q
    || | ||| || ||||| ||| |||| |||||||||| ||| |||| | | |||||||  |||  ||||||||||||||||||||||||  | |||| ||    
T  3393034 gaaaaaatacccaatgatcaaatacatgagaaactaaaaattagctttaatggtttaagcgatcgtatggaaaaggatatatttcttgatgtctgttgtt 3392935  T
Q  200 tctttatcggcaagga 215  Q
    ||||||||||||||||    
T  3392934 tctttatcggcaagga 3392919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3362750 - 3362964
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    ||||| || ||||| ||| | ||||| ||||||||| |||||||||||||||| |     |||| ||||  ||| |||   |||||||| ||||| ||||    
T  3362750 gttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttgttcaagaggaaaaaacaagagtggcggagtgtattatcaaagctag 3362849  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    | |  || || ||||| ||| |||| |||| ||||| |||||||| ||| ||||||||||||  |||||||||| |||||||||||||  | || | |||    
T  3362850 aaaagatacccaatgatcaaatacacgagatactaaaaataagctttgatggtttaaaggatcgtatggaaaagaatatatttcttgatgtctgctgttt 3362949  T
Q  201 ctttatcggcaagga 215  Q
    ||||||||| |||||    
T  3362950 ctttatcggtaagga 3362964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 3400155 - 3399965
Alignment:
Q  13 ggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattccta 112  Q
    |||||||| ||||| ||||||||| ||||||||  ||||||||     |||||||   ||||||||| ||||| | | |||||| |||||| |||||| |    
T  3400155 ggaggattaccactggctcttgaagtccttggaagttacttatcaaagaggacaacccgagaatggagaagtgcactatcaaaattagagaaaattccca 3400056  T
Q  113 atgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctt 203  Q
    |  |  |||| ||| ||| | | ||||| |||||||| |||||| | ||| |||   ||||||| ||||||||||||||||||| ||||||    
T  3400055 acaatgaagtgcaacagatattgagaatcagctatgatggtttacaagattatacacaaaaggacatatttcttgacatatgttgtttctt 3399965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 14768465 - 14768242
Alignment:
Q  1 gttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactag 100  Q
    |||||||| ||||||||||||||| | ||||||||| || ||||||||||||||||||| |||||||||  |||||||  ||||||| |||||||| ||     
T  14768465 gttgcttattgtggaggattgccattggctcttgaagtcattggatcttacttatatgggaggacaaaaccagaatgggaaagtgtactgtcaaaattaa 14768366  T
Q  101 agagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgtttttt 200  Q
    |||||||||| ||||| ||||| ||  ||||||| || ||||||||  | |||||| |||||||| |  |||||||||||||||||||||||||||||||    
T  14768365 agagaattcccaatgatcaagtgcatcagaaactgagtataagctacaatggtttagaggatgatttaaaaaaggatatatttcttgacatatgtttttt 14768266  T
Q  201 ctttatcggcaaggacagggccta 224  Q
    |||||| |||||||| || |||||    
T  14768265 ctttattggcaaggatagagccta 14768242  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 30416505 - 30416680
Alignment:
Q  43 ggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataa 142  Q
    |||||||| |||||||| ||||||| |  |||||||||||||||  | ||||||||||||| ||||||| |  | || || |||||||||||||||||||    
T  30416505 ggatcttatttatatggcaggacaagagaagaatggacaagtgtgctatcaaaactagagataattcctgaccatcatgtgcaagagaaactaagaataa 30416604  T
Q  143 gctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaaggacag 218  Q
    |||| || ||| |||  |||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30416605 gctacgatggtctaagtgatggtaagcaaaaggatatatttcttgacatatgttgtttctttatcggcaaggacag 30416680  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 15801625 - 15801728
Alignment:
Q  112 aatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggca 211  Q
    ||||| ||| |||| |||||||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||||||  | |||| |||||||||||| |    
T  15801625 aatgatcaaatacacgagaaactaaaaataagctttgatggtttagaggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggta 15801724  T
Q  212 agga 215  Q
    ||||    
T  15801725 agga 15801728  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 12596389 - 12596476
Alignment:
Q  128 agaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaagga 215  Q
    ||||||||| |||||| |  || ||||||| ||||  |||||||||||||||||||||||| || |||| |||||||||||| |||||    
T  12596389 agaaactaaaaataagtttcgaaggtttaagggatcgtatggaaaaggatatatttcttgatatttgttgtttctttatcggtaagga 12596476  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 20810772 - 20810839
Alignment:
Q  136 agaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctt 203  Q
    ||||| |||||||| |||||| | ||| ||| | ||||||| ||||||||||||||||||| ||||||    
T  20810772 agaatcagctatgatggtttagaagattatacgcaaaaggacatatttcttgacatatgttgtttctt 20810839  T

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Target: scaffold0468 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 7798 - 7587
Alignment:
Q  6 ttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagaga 105  Q
    |||||||||||| ||||| || ||||||||||| || |||||| |||||| || |||||||||   |||||||| ||||||  | |||||| |||| | |    
T  7798 ttactgtggagggttgcccctagctcttgaaattctcggatctcacttatttgaaaggacaaaggaagaatggaaaagtgtgctatcaaaattagaaaaa 7699  T
Q  106 attcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttcttta 205  Q
    |||||  ||||  |||| ||||||||||| |||||||||||||| ||||| |  || || | | |||||| ||||||||||||  |||||| ||||||||    
T  7698 attccccatgaagaagtgcaagagaaactgagaataagctatgatggtttgacagaagacacgaaaaaggctatatttcttgatgtatgttgtttcttta 7599  T
Q  206 tcggcaaggaca 217  Q
    ||||||||||||    
T  7598 tcggcaaggaca 7587  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 8373263 - 8373075
Alignment:
Q  15 aggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaactagagagaattcctaat 114  Q
    |||||| ||||| ||||||||| |||||||||||||||||| |   |||||| ||  |||||||| ||||| ||| |||||| ||  || |||||| ||     
T  8373263 aggattaccactagctcttgaagtccttggatcttacttatctaagaggacagaacaagaatggagaagtgcattatcaaaattaacgaaaattcccaac 8373164  T
Q  115 gaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctt 203  Q
     || |||| | | ||| | | ||||| |||||||| |||||| | ||| |||  |||||||||||||||||||||||||||| ||||||    
T  8373163 aacgaagtgctacagatattgagaatcagctatgatggtttagaagattatacagaaaaggatatatttcttgacatatgttgtttctt 8373075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 36215445 - 36215342
Alignment:
Q  103 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 202  Q
    |||||||| ||||||||||||||| ||||  ||| ||| |||||||| ||| |||| ||||| | ||| || || ||||| |||||||||  || |||||    
T  36215445 agaattcccaatgaccaagtacaaaagaagttaaaaatgagctatgaaggtctaaatgatgacacggagaaagaaatattccttgacatagcttgtttct 36215346  T
Q  203 ttat 206  Q
    ||||    
T  36215345 ttat 36215342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 5356169 - 5356066
Alignment:
Q  103 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttct 202  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||||| |||||||| ||||||   || || || |||||||||||||||  || |||||    
T  5356169 agaattcctaacaaccaagtacaaaagaaactaaaaataagctatgatggtttaaatgatgatgccgagaaagaaatatttcttgacatagcttgtttct 5356070  T
Q  203 ttat 206  Q
    ||||    
T  5356069 ttat 5356066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 5068658 - 5068524
Alignment:
Q  72 agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa 171  Q
    |||||||| ||||||||||   |||||  | |||||||||||| | |||||||| |||||  |||||||||||||||| | |||||| |||||||  ||     
T  5068658 agaatggaaaagtgtattggacaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag 5068559  T
Q  172 aaggatatatttcttgacatatgttttttctttat 206  Q
    || || ||||| |||||||||  || |||||||||    
T  5068558 aaagaaatattccttgacatagcttgtttctttat 5068524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 5424171 - 5424305
Alignment:
Q  72 agaatggacaagtgtattgtcaaaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaa 171  Q
    |||||||| ||||| ||||  ||||||  | |||||||||||| | |||||||| |||||  |||||||||||||||| | |||||| |||||||  ||     
T  5424171 agaatggaaaagtgcattggaaaaactcaaaagaattcctaataatcaagtacaggagaagttaagaataagctatgatgctttaaatgatgatactgag 5424270  T
Q  172 aaggatatatttcttgacatatgttttttctttat 206  Q
    || || ||||| |||||||||  || |||||||||    
T  5424271 aaagaaatattccttgacatagcttgtttctttat 5424305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 5175306 - 5175377
Alignment:
Q  94 aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat 165  Q
    |||||||| ||||||||||||||| |||||||| ||||  ||| |||||||||||| |||||| | ||||||    
T  5175306 aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat 5175377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 5277133 - 5277204
Alignment:
Q  94 aaactagagagaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgat 165  Q
    |||||||| ||||||||||||||| |||||||| ||||  ||| |||||||||||| |||||| | ||||||    
T  5277133 aaactagaaagaattcctaatgacaaagtacaaaagaagttaaaaataagctatgatggtttagacgatgat 5277204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 5104425 - 5104364
Alignment:
Q  103 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatga 164  Q
    |||||||||||| | ||||||||| ||||  ||||||||||||| || |||||||| |||||    
T  5104425 agaattcctaataatcaagtacaaaagaagttaagaataagctacgatggtttaaatgatga 5104364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 5133458 - 5133369
Alignment:
Q  103 agaattcctaatgaccaagtacaagagaaactaagaataagctatgacggtttaaaggatgatatggaaaaggatatatttcttgacata 192  Q
    |||||||||||| | ||||||||| |||| |||| |||||||||||| | |||||| || ||||| || || || ||||| ||| |||||    
T  5133458 agaattcctaataatcaagtacaaaagaagctaaaaataagctatgatgctttaaatgaagatattgagaaagaaatattccttaacata 5133369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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