View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14534_high_10 (Length: 313)

Name: NF14534_high_10
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14534_high_10
NF14534_high_10
[»] chr2 (1 HSPs)
chr2 (17-310)||(44763853-44764146)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 44764146 - 44763853
Alignment:
Q  17 aagttcaatttaaaagatatttatggtcattttttagtgagaaacaataccnnnnnnnnaagagccaaactatattaaaattagaaatttaattggcaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  44764146 aagttcaatttaaaagatatttatggtcattttttagtgagaaacaataccttatttttaagagccaaactatattaaaattagaaatttaattggcaca 44764047  T
Q  117 agaaatgccaaaattagcagaacaacaagaagaataaaagatgccaaaatttagaacaagtaatccctgcacataattatatcatagagtacaactagta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44764046 agaaatgccaaaattagcagaacaacaagaagaataaaagatgccaaaatttagaacaagtaatccctgcacataattatatcatagagtacaactagta 44763947  T
Q  217 atcatcttatttatgagacattattgtatctaaaacactgatattgctaataattaacattacaaggtctttcttagattcttttcctatgcta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44763946 atcatcttatttatgagacattattgtatctaaaacactgatattgctaataattaacattacaaggtctttcttagattcttttcctatgcta 44763853  T

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