View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14534_high_12 (Length: 278)
Name: NF14534_high_12
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 41199007 - 41198794
Alignment:
| Q |
15 |
cacagacaaataacaaccatgaaaaaagcttcaatctccaaagacacttaacatacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199007 |
cacagacaaataacaaccatgaaaaaagcttcaatctccaaagacacttaacatacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagt |
41198908 |
T |
|
| Q |
115 |
ggttaattcaggatacccttgggagtttcagaatgaggtttagggttcaaattctagctactaacattttccgtaagaaaaacaatgtactactgataca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198907 |
ggttaattcaggatacccttgggagtttcagaatgaggtttagggttcaaattctagctactaacattttccgtaagaaaaacaatgtactactgataca |
41198808 |
T |
|
| Q |
215 |
caaacatgttcaag |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41198807 |
caaacatgttcaag |
41198794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 41208928 - 41208842
Alignment:
| Q |
68 |
tacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagtggttaattcaggatacccttgggagtttcagaatgaggtt |
154 |
Q |
| |
|
||||||||||||||||||| |||| ||||| || | ||||| |||||||| |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
41208928 |
tacaccatcaacaatgtactatgtggtccctaatgtataactcaagtggtttattcaggacacctgaaggagtttgagaatgaggtt |
41208842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University