View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14534_high_19 (Length: 215)
Name: NF14534_high_19
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 26786429 - 26786562
Alignment:
| Q |
59 |
ctggttttgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagaaagttcacatgcagca |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26786429 |
ctggttttgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagca |
26786528 |
T |
|
| Q |
159 |
ccaattgatagctgataaacctacatttagaacc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26786529 |
ccaattgatagctgataaacctacatttagaacc |
26786562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 26823309 - 26823423
Alignment:
| Q |
66 |
tgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagaaagttcacatgcagcaccaattg |
165 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26823309 |
tgtagcatgtataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattg |
26823408 |
T |
|
| Q |
166 |
atagctgataaacct |
180 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
26823409 |
ataactgataaacct |
26823423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 26799228 - 26799332
Alignment:
| Q |
76 |
ataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagaaagttcacatgcagcaccaattgatagctgata |
175 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26799228 |
ataccttgatggttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
26799327 |
T |
|
| Q |
176 |
aacct |
180 |
Q |
| |
|
||||| |
|
|
| T |
26799328 |
aacct |
26799332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 26833220 - 26833349
Alignment:
| Q |
62 |
gttttgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagaaagttcacatgcagcacca |
161 |
Q |
| |
|
||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||| |
|
|
| T |
26833220 |
gttttgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcacca |
26833319 |
T |
|
| Q |
162 |
attgatagctgataaacctacatttagaac |
191 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| |
|
|
| T |
26833320 |
attgataactgataaacctgcattttgaac |
26833349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 41917095 - 41916988
Alignment:
| Q |
77 |
taccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagaaagttcacatgcagcaccaattgatagctgataa |
176 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||| ||||| |||||||||||||| ||||| |||||||||| |||||||| | |||||| |
|
|
| T |
41917095 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
41916996 |
T |
|
| Q |
177 |
acctacat |
184 |
Q |
| |
|
|||||||| |
|
|
| T |
41916995 |
acctacat |
41916988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University