View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_high_20 (Length: 214)
Name: NF14534_high_20
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_high_20 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 49274512 - 49274711
Alignment:
| Q |
19 |
caaatgatacaacagtagctcttaaactcaatagcatgcatagttaagagataagcctaatatggcaaaagaagacttgcaagaacgctgaacggctgaa |
118 |
Q |
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| T |
49274512 |
caaatgatacaacagtagctcttaaaatcaatagcatgcatagttaagagataagcctaatatggcaaaagaagacttgcaagaacgctgaacggctgaa |
49274611 |
T |
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| Q |
119 |
gccagagacagcacaaagagagat----agcaatagctgtgctaaaaagagcaagtttacacaaatgaccaaccagcatcattgaaataatttgtagaaa |
214 |
Q |
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| T |
49274612 |
gccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaa |
49274711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 49254965 - 49254865
Alignment:
| Q |
114 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctaaaaagagcaagtttacacaaatgaccaaccagcatcattgaaataatttgtagaa |
213 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
49254865 |
a |
49254865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 49267227 - 49267127
Alignment:
| Q |
114 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctaaaaagagcaagtttacacaaatgaccaaccagcatcattgaaataatttgtagaa |
213 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
49267127 |
a |
49267127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 49271633 - 49271533
Alignment:
| Q |
114 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctaaaaagagcaagtttacacaaatgaccaaccagcatcattgaaataatttgtagaa |
213 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
49271533 |
a |
49271533 |
T |
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