View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14534_high_5 (Length: 490)

Name: NF14534_high_5
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14534_high_5
NF14534_high_5
[»] chr8 (4 HSPs)
chr8 (30-367)||(27513349-27513662)
chr8 (370-469)||(27513615-27513714)
chr8 (252-349)||(8675247-8675345)
chr8 (420-469)||(8675196-8675245)
[»] chr1 (5 HSPs)
chr1 (30-309)||(24036304-24036578)
chr1 (379-447)||(39210097-39210165)
chr1 (301-361)||(24036763-24036823)
chr1 (370-469)||(24036782-24036881)
chr1 (329-367)||(39210127-39210165)
[»] chr2 (1 HSPs)
chr2 (389-458)||(38950770-38950839)
[»] chr6 (2 HSPs)
chr6 (385-451)||(18331879-18331945)
chr6 (334-369)||(18331878-18331913)
[»] chr3 (1 HSPs)
chr3 (408-451)||(9461255-9461298)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 27513349 - 27513662
Alignment:
Q  30 gagatgaaaacaatgagatgcggttcaagatgaaatcaaactttttcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaatt 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  27513349 gagatgaaaacgatgagatgcggttcaagatgaaatcaaactttttcgaa------------acggattagtgtttttgaatcggatggtttctgtaatt 27513436  T
Q  130 gaacctttaagactcaatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaat 229  Q
    ||||||||||||||||||| |            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  27513437 gaacctttaagactcaatggt------------gaatcagaaggcttagggtgagaatctgaaatctttaatggtgaaagaaggttagtggatcgttaat 27513524  T
Q  230 catcatgctctggaatttgtaacatatcatagtttatttttgtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaa 329  Q
    ||||||||||||||||| | | |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  27513525 catcatgctctggaattagcagcatatcatagttgatttttctcttcaaaatcctaattcaaacctcacattataacaaatgactataccaataaccaaa 27513624  T
Q  330 atatatattctacactcacaacattgaaatctaatcta 367  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27513625 atatatattctacactcacatcattgaaatctaatcta 27513662  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 370 - 469
Target Start/End: Original strand, 27513615 - 27513714
Alignment:
Q  370 aataaccaaaatatgtattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctctt 469  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27513615 aataaccaaaatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctctt 27513714  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 8675345 - 8675247
Alignment:
Q  252 catatcatagtttattttt-gtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaaatatatattctacactcaca 349  Q
    ||||||||||||||||||| || |||||||||||||||  || |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8675345 catatcatagtttattttttgttttcaaaatcctaattataatctcacagtataacaaatgattataacaataaacaaaatatatattctacactcaca 8675247  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 8675245 - 8675196
Alignment:
Q  420 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctctt 469  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctctt 8675196  T

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Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 24036304 - 24036578
Alignment:
Q  30 gagatgaaaacaatgagatgcggttcaagatgaaatcaaactttt-tcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaat 128  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||  ||||||| |||    
T  24036304 gagatgaaaactatgagatgcggttcaagatgaaatcaaacttttttcgaatcactaatcaaaactgattagtgtttttgaatcagaaagtttctgaaat 24036403  T
Q  129 tgaacctttaagactcaatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaa 228  Q
    |||||||||||||||||||      ||| |||||||||||  |||||| || |||||||||||||||||||||| |||| || |||| | | ||||||||    
T  24036404 tgaacctttaagactcaat------gatggaggagaatcaacaggctt-ggatgagaatctgaaatcgttaatggtgaaggatggtttgtgaatcgttaa 24036496  T
Q  229 tcatcatgctctggaatttgtaacatatcatagttta-tttttgtcttcaaaatcctaatttaaacctcacattataacaaa 309  Q
    |||||| |||||||||||   | |||||||||||||| ||||| ||||||||||||||||| ||| |||||| |||||||||    
T  24036497 tcatcaggctctggaattaacatcatatcatagtttattttttctcttcaaaatcctaattcaaatctcacagtataacaaa 24036578  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 39210165 - 39210097
Alignment:
Q  379 aatatgtattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaa 447  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39210165 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaaaaatcaa 39210097  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 24036763 - 24036823
Alignment:
Q  301 tataacaaatgattataccaataaccaaaatatatattctacactcacaacattgaaatct 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24036763 tataacaaatgattataccaataaccaaaatatatattctacactcaaaacattgaaatct 24036823  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 370 - 469
Target Start/End: Original strand, 24036782 - 24036881
Alignment:
Q  370 aataaccaaaatatgtattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctct 468  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | ||||||||||||||||    
T  24036782 aataaccaaaatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctct 24036880  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 39210165 - 39210127
Alignment:
Q  329 aatatatattctacactcacaacattgaaatctaatcta 367  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  39210165 aatatatattctacactcacaacattggaatctaatcta 39210127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 38950770 - 38950839
Alignment:
Q  389 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaa 458  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaa 38950839  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 451
Target Start/End: Original strand, 18331879 - 18331945
Alignment:
Q  385 tattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 451  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331879 tattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 369
Target Start/End: Original strand, 18331878 - 18331913
Alignment:
Q  334 atattctacactcacaacattgaaatctaatctaat 369  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaat 18331913  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 9461298 - 9461255
Alignment:
Q  408 atctaatctattcatattcaaattagttcaaaacaatcaaaatt 451  Q
    |||||||||| ||||||||||||||| |||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaatt 9461255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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