View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_low_1 (Length: 991)
Name: NF14534_low_1
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_low_1 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 695; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 61 - 886
Target Start/End: Original strand, 15148200 - 15149004
Alignment:
| Q |
61 |
tgattattataatttgcagtcttagacaattactttgttgaaagatagagatgttcctagaaatataagactagacaaaggtcttgaaacatgagaatag |
160 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148200 |
tgattattataatttgcagtcttagacaattactttgttgaaagataaagatgttcctagaaatataagactagacaaaggtcttgaaacatgagaatag |
15148299 |
T |
|
| Q |
161 |
cttaa-ggcttttgggatgtaatgaataatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcaca |
259 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148300 |
cttaaaggcttttgggatgtaatgaataatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcaca |
15148399 |
T |
|
| Q |
260 |
cccatttttattgcaagagaacaaaagatatttttaagagttaccgcatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattg |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148400 |
cccatttttattgcaagagaacaaaagatatttttaagagttaccacatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattg |
15148499 |
T |
|
| Q |
360 |
ttcattgtaatgatgaacaacatgactacaagacgttttaattaattgcatattttcagaactaaaacaaatcatcaaccttgaagagcaatagcatatt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148500 |
ttcattgtaatgatgaacaacatgactacaagacgttttaattaattgcatattttcagaactaaaacaaatcatcaaccttgaagagcaatagcatatt |
15148599 |
T |
|
| Q |
460 |
ctaactaaatactttggaaacacaaatcaccttaagattcacaagtccctacaaatacaatactctttttattacgacgatatattcataccttgatata |
559 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148600 |
ctaactaaatactttggaaacacagatcaccttaagattcacaagtccctacaaatacaatactctttttattacgacgatatattcataccttgatata |
15148699 |
T |
|
| Q |
560 |
aattgtttgtcttctcaaagattctgacttaattaagtcatttgaggaatcaagttttactactagaaaaagttgatatgttgacgaaatttagagaagg |
659 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15148700 |
aattgcttgtcttctcaaagattctgacttaattaagtcatttgaggaatcaacttttactactagaaaaagttgatatgttgacgaaatttagagaagg |
15148799 |
T |
|
| Q |
660 |
aatctctttatcaatattagagacggaagtggagacggaaatttgttatttggagacggaatttagagacaaaattctctgtgaatgaattcttcaatga |
759 |
Q |
| |
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| T |
15148800 |
aatctctttatcaatat----------agtggagacggaaatttgttatttggagacggaatttagagacaaaattctctg------------tcaatga |
15148877 |
T |
|
| Q |
760 |
tcattgtctgtctcaaaatccgtctctaataaaatactttgttgtttagagaccaaatctagagatagaaacctagttgttcgactcaaattttgtctct |
859 |
Q |
| |
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||||||| |||||| ||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15148878 |
tcattgtttgtctctaaatccgtctctaatgagatactttgttgtttagagatcgaatctagagatagaaacctaattgttcgactcaaattttgtctct |
15148977 |
T |
|
| Q |
860 |
gtaaacatccgtctctaaatccatctc |
886 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
15148978 |
gtaaacatccgtctctaaatccatctc |
15149004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 209 - 377
Target Start/End: Complemental strand, 43471332 - 43471164
Alignment:
| Q |
209 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
308 |
Q |
| |
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||||||||||||||||||||| |||||| || ||| |||||||| |||| | || || ||||||||| ||||| |||||||||||||||||| | | |
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| T |
43471332 |
tcttaccaacatagaaaccatgataatagtgagttatgttggtaagacacatcatttgttcttgcaagaggacaaataatatttttaagagttacctctt |
43471233 |
T |
|
| Q |
309 |
ccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaac |
377 |
Q |
| |
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| T |
43471232 |
ccttagacaatgatttttcatagcattaaaaaaattatgaactaggaattgttcatcgtaatgatgaac |
43471164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 918 - 976
Target Start/End: Original strand, 15150422 - 15150480
Alignment:
| Q |
918 |
tagggaagaaagaatcaccttgnnnnnnngaatcatgagagtgaaagaaacaattttgt |
976 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15150422 |
tagggaagaaagaatcaccttgaaaaaaagaatcatgagagtgaaagaaacaattttgt |
15150480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 48443816 - 48443977
Alignment:
| Q |
209 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
308 |
Q |
| |
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|||||| |||||||||| ||| | ||||| || ||| ||||||||||| || | || || |||||||| | ||||||||||||||||||||||| ||| |
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| T |
48443816 |
tcttacgaacatagaaatcatgagaataacgagttatgttggtaaggcaaactctttgttcttgcaagatgataaaagatatttttaagagttacctcat |
48443915 |
T |
|
| Q |
309 |
ccttaagtaatgattttttatgacgt-aggaaagattatgaactagggattgttcattgtaat |
370 |
Q |
| |
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| T |
48443916 |
ccttaggcaataattttacataacataagaaaagattatgaacta-ggattattcattgtaat |
48443977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 719
Target Start/End: Complemental strand, 23107 - 23006
Alignment:
| Q |
618 |
actactagaaaaagttgatatgttgacgaaatttagagaaggaatctctttatcaatattagagacggaagtggagacggaaatttgttatttggagacg |
717 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||| ||| || || |||||| |||||| |||||| |||||||| ||||||||||| |
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| T |
23107 |
actactagaaaaagttgatatactgacgaaatttagagacggaactacttcgtctctaatagagatggaagttgagacgaaaatttgtaatttggagacg |
23008 |
T |
|
| Q |
718 |
ga |
719 |
Q |
| |
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|| |
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|
| T |
23007 |
ga |
23006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 613 - 719
Target Start/End: Original strand, 16914299 - 16914405
Alignment:
| Q |
613 |
gttttactactagaaaaagttgatatgttgacgaaatttagagaaggaatctctttatcaatattagagacggaagtggagacggaaatttgttatttgg |
712 |
Q |
| |
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|||| ||||||||||||||||||||| |||| |||||||||| ||||| ||| || || |||||||||||| |||||||||| |||| |||||| |
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| T |
16914299 |
gtttcactactagaaaaagttgatataccgacggaatttagagatggaattgcttcgtctctagcagagacggaagttgagacggaaagttgtaatttgg |
16914398 |
T |
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| Q |
713 |
agacgga |
719 |
Q |
| |
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||||||| |
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| T |
16914399 |
agacgga |
16914405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 719
Target Start/End: Original strand, 21835963 - 21836004
Alignment:
| Q |
678 |
agagacggaagtggagacggaaatttgttatttggagacgga |
719 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
21835963 |
agagacggaagttgagacggaaatttgtaatttggagacgga |
21836004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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