View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_low_12 (Length: 292)
Name: NF14534_low_12
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 9619683 - 9619937
Alignment:
| Q |
14 |
caaagggttaacactaaaaacattaacaaaacaacggtctgaaaagtgaagatgaaagttgaaattgaaattgatcagatcccttccagaccctgaccca |
113 |
Q |
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| T |
9619683 |
caaagagttaacactaaaaacattaacaaaacaaa---ctgaaaagtgaaaatgaaagttgaaactgaaattgatcagatcccttccagaccctgaccca |
9619779 |
T |
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| Q |
114 |
gatnnnnnnnnnttattgaaagttatctaaacaacaacatttcaagagataggaagnnnnnnnnnntgaattaccaattgccatgagatcaggaacagtt |
213 |
Q |
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| T |
9619780 |
gatgaaaaaaa-ttattgaaagttatctaaacaacagcatttcaagagataggaagaaaaaaaaaatgaattaccaattgccatgagatcaggaacagtt |
9619878 |
T |
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| Q |
214 |
aactccttagcaagttgtactccatgagagttcttgttgatattctcaacatgagaatt |
272 |
Q |
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| T |
9619879 |
aactccttagcaagttgtactccatgagagttcttgttgatattctcaacatgagaatt |
9619937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 9633984 - 9634089
Alignment:
| Q |
128 |
attgaaagttatctaaacaacaacatttcaagagataggaagnnnnnnnnnntgaattaccaattgccatgagatcaggaacagttaactccttagcaag |
227 |
Q |
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| T |
9633984 |
attgaaaatcatctaaacaacaacatttcaagagataggaaaaa---------gaattaccaattgccatgagatgaggaacagttaactccttagcaag |
9634074 |
T |
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| Q |
228 |
ttgtactccatgaga |
242 |
Q |
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| T |
9634075 |
ttgcactccatgaga |
9634089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 9642188 - 9642248
Alignment:
| Q |
180 |
tgaattaccaattgccatgagatcaggaacagttaactccttagcaagttgtactccatga |
240 |
Q |
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| T |
9642188 |
tgaattaccaattgccataagatgaggaatagttaactccttagcaagttgcactccatga |
9642248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 9659267 - 9659327
Alignment:
| Q |
180 |
tgaattaccaattgccatgagatcaggaacagttaactccttagcaagttgtactccatga |
240 |
Q |
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| T |
9659267 |
tgaattaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatga |
9659327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 9642075 - 9642124
Alignment:
| Q |
20 |
gttaacactaaaaacattaacaaaacaacggtctgaaaagtgaagatgaaag |
71 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||||||| ||||||| |
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| T |
9642075 |
gttaacactaaaaaaatttacaaaacaa--gtctgaaaagtgaaaatgaaag |
9642124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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