View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14534_low_16 (Length: 251)

Name: NF14534_low_16
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14534_low_16
NF14534_low_16
[»] chr4 (11 HSPs)
chr4 (1-238)||(1545628-1545867)
chr4 (1-223)||(553349-553573)
chr4 (1-75)||(1600439-1600513)
chr4 (128-222)||(55505237-55505333)
chr4 (128-225)||(546781-546880)
chr4 (17-88)||(8187112-8187183)
chr4 (1-66)||(1513412-1513477)
chr4 (1-66)||(1548429-1548494)
chr4 (1-66)||(7307889-7307954)
chr4 (1-58)||(8184035-8184092)
chr4 (1-66)||(12121462-12121527)
[»] chr5 (2 HSPs)
chr5 (1-88)||(41889559-41889646)
chr5 (3-88)||(41901542-41901627)
[»] chr8 (4 HSPs)
chr8 (1-113)||(18315278-18315390)
chr8 (1-88)||(27922515-27922602)
chr8 (1-54)||(28246300-28246353)
chr8 (1-55)||(21235598-21235652)
[»] chr3 (4 HSPs)
chr3 (1-89)||(51120898-51120986)
chr3 (128-223)||(51113913-51114010)
chr3 (129-223)||(514861-514957)
chr3 (1-54)||(1657292-1657345)
[»] chr6 (4 HSPs)
chr6 (1-70)||(6432186-6432255)
chr6 (1-54)||(11936280-11936333)
chr6 (1-54)||(11948260-11948313)
chr6 (1-38)||(12102323-12102360)
[»] chr2 (1 HSPs)
chr2 (1-70)||(32785777-32785846)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1545867 - 1545628
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtcatataattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1545867 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttatataataacaaagaattgtcatataattttg 1545768  T
Q  101 caactgttattggtatattgtgagtgcgtcacatagaagggagtgaaagatgcggtaaaaaactg--cacaactaagagtgatcaatttgaggggttgtg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1545767 caactgttattggtatattgtgagtgcgtcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgaggggttgtg 1545668  T
Q  199 ataaagtgcatgctaatgttgttgctttattagtattatc 238  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1545667 ataaagtgcatgctaatgttattgctttattagtattatc 1545628  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 553573 - 553349
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtcatataattttg 100  Q
    ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||   ||  |||||||||||  |    |||||    
T  553573 gaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttg 553474  T
Q  101 caactgttattggtatattgtgagtg-cgtcacatagaagggagtgaaagatgcggtaaaaaactg--cacaactaagagtgatcaatttgaggggttgt 197  Q
    |||||||| ||| | |||||| ||||  |||||| | || ||||||||  ||| |||| |||||||  ||||||| |||| |||| ||||| ||||||||    
T  553473 caactgttgttgttttattgt-agtgatgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgt 553375  T
Q  198 gataaagtgcatgctaatgttgttgc 223  Q
    |||||||||||||| |||||||||||    
T  553374 gataaagtgcatgcaaatgttgttgc 553349  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1600513 - 1600439
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaat 75  Q
    ||||||| |||||| |||||||||||||||||||||||  | |||||| ||||| |||||| |||| ||||||||    
T  1600513 gaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactctataaaat 1600439  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 55505237 - 55505333
Alignment:
Q  128 gtcacatagaagggagtgaaagatgcggtaaaaaactgcaca--actaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttgttg 222  Q
    |||||| |||||||||||||| | | | || |||||||||||  |||||||| |||||| ||||  |||||||||||||||||| ||| ||||||||    
T  55505237 gtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttg 55505333  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 546880 - 546781
Alignment:
Q  128 gtcacatagaagggagtgaaagatgcggtaaaaaactgcac--aactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttgttgctt 225  Q
    |||||| |||||||||||||| ||| | || ||||||||||  ||||||||| ||||||||| |||| |||| |||||||| ||| |||||  |||||||    
T  546880 gtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaagggcttgtaataaagtgaatgttaatgccgttgctt 546781  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 8187112 - 8187183
Alignment:
Q  17 aaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 88  Q
    ||||||||||||||||||||||    |||||||||||||||| |||||||||||  |||  |||||||||||    
T  8187112 aaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgt 8187183  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1513412 - 1513477
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 66  Q
    ||||||| ||||||| ||||| || |||||||||||||  |||||||  |||||||||||||||||    
T  1513412 gaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacact 1513477  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1548429 - 1548494
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 66  Q
    ||||||| || |||| ||||||||||||||||||||||    ||||||  ||||||||||||||||    
T  1548429 gaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 1548494  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7307954 - 7307889
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 66  Q
    ||||||||||||||| ||| ||||||| ||||||||||  | ||||  ||||||||||||| ||||    
T  7307954 gaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcact 7307889  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8184035 - 8184092
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgat 58  Q
    ||||||| ||||||| ||||| ||||||||||||||||    ||||||||||||||||    
T  8184035 gaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12121462 - 12121527
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 66  Q
    ||||||| ||||||| ||||| || |||||||||||||  | |||||  |||||||||||||||||    
T  12121462 gaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacact 12121527  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41889559 - 41889646
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 88  Q
    ||||||||||||||| ||| |||||||||||||||| |  | ||||| |||||||||||||||||||||||| ||  |||||||||||    
T  41889559 gaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgt 41889646  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 41901542 - 41901627
Alignment:
Q  3 actttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 88  Q
    ||||| ||||||| ||||||||||||||||||||||  | ||||| ||||||||||||| |||||||||  ||  |||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgt 41901627  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 18315278 - 18315390
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtcatataattttg 100  Q
    ||||||||||||||| ||||||||||||||||||||||    ||||| ||||||||||||| |||| |||   ||  |||||||||||| ||   |||||    
T  18315278 gaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttg 18315377  T
Q  101 caactgttattgg 113  Q
    |||||||||||||    
T  18315378 caactgttattgg 18315390  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27922602 - 27922515
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgt 88  Q
    ||||||| ||||||| ||| ||||||||||||||||||  | |||||  |||||||||||| |||||||||  ||  |||||||||||    
T  27922602 gaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgt 27922515  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28246300 - 28246353
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 54  Q
    ||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  28246300 gaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 28246353  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21235652 - 21235598
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgat 55  Q
    ||||||| ||||||| ||||||||||||||||||||||  | |||| ||||||||    
T  21235652 gaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgat 21235598  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 51120898 - 51120986
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttataaaataacaaagagttgtc 89  Q
    ||||||| ||||||  ||| |||||||||||||||||| |  |||||||||||||||||||| ||| |||  |||  ||||||||||||    
T  51120898 gaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtc 51120986  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 51113913 - 51114010
Alignment:
Q  128 gtcacatagaagggagtgaaagatgcggtaaaaaactgcacaa--ctaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttgttgc 223  Q
    |||||| |||||||||||||  ||| |||| |||| |||||||  ||||||| ||| ||||| | |||||||  |||||||||||||||| |||||||    
T  51113913 gtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgc 51114010  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 514861 - 514957
Alignment:
Q  129 tcacatagaagggagtgaaagatgcggtaaaaaactgcaca--actaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttgttgc 223  Q
    ||||| ||| |||||||||  ||| ||| ||||||||||||  ||| |||| ||||||||| || |||||| |||||||||||  ||||||||||||    
T  514861 tcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgc 514957  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1657345 - 1657292
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 54  Q
    ||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  1657345 gaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 1657292  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6432255 - 6432186
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 70  Q
    ||||||| ||||||| || ||| |||||||||||||||    |||||| |||||||||||||||||||||    
T  6432255 gaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttat 6432186  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11936280 - 11936333
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 54  Q
    ||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  11936280 gaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11936333  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11948260 - 11948313
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 54  Q
    ||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  11948260 gaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 11948313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12102360 - 12102323
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgt 38  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  12102360 gaactttgaagttcccaaactggaggtgttgaacttgt 12102323  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32785777 - 32785846
Alignment:
Q  1 gaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttat 70  Q
    ||||||||||| ||| ||||| ||||||||||||||||    ||||||| ||||||||||| ||||||||    
T  32785777 gaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttat 32785846  T

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