View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_low_2 (Length: 603)
Name: NF14534_low_2
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 230 - 602
Target Start/End: Complemental strand, 46756354 - 46755985
Alignment:
| Q |
230 |
tcaccccataaatttagagaacgacttattaaatttaaacccaaataatataatagtaacatgtattttacagtacacaactcggttatatgcataaata |
329 |
Q |
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| T |
46756354 |
tcaccccataaatttagagaacgacttattaaatttaaacccaaataatataatagtaacatgtattttacagtacacaactcagttatatgcataaata |
46756255 |
T |
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| Q |
330 |
ataaacgaagaaataaagctatattatgtatttccaattaagtcgagtttcacttatagttgatatataatacatgctctccaagtacaa--acgaccac |
427 |
Q |
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| T |
46756254 |
ataaacgaagaaataaagctatattatgtatttccaattaagtcaagtttcacttatagttgatatataatacatgctctccaagtacaaacacgaccac |
46756155 |
T |
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| Q |
428 |
actattatgtagttgtccattacaagtctttatttaaccttcgaggacaatcacgaaatgaaataacattcgatttaaccctcatgttatgttatgtgaa |
527 |
Q |
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| T |
46756154 |
actattatgtagttgtccattacaagtctttatttaaccttcgaggacaatcacgaaatgaaataacattctatttaaccctc-----atgttatgtgaa |
46756060 |
T |
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| Q |
528 |
cataaaaatgtagaaacagttaactaaccaccttataagaaagcttctctttcagccgcagaataatctacccac |
602 |
Q |
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| T |
46756059 |
cataaaaatgtagaaacagttaactaaccaccttataagaaagcttctctatcagccgcagagcaatctagccac |
46755985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 46756527 - 46756423
Alignment:
| Q |
90 |
gatgggttacaatatcagcaacattgattctccaaaaatcaggattatatcatttacaattgttcgcataaaaagggggaagtaaattatgacatatata |
189 |
Q |
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| T |
46756527 |
gatgggttacaatatcagcaacattgattctccaaaaatcaggattatatcatttacaattgttcgcataaaaaaggggaagtaaattatgacatatata |
46756428 |
T |
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| Q |
190 |
aattg |
194 |
Q |
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| T |
46756427 |
aattg |
46756423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 46756710 - 46756650
Alignment:
| Q |
19 |
aaagggagcgtcatcccttataaacacgggatacccctttagtcacatcagaggcgtcgaa |
79 |
Q |
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| T |
46756710 |
aaagggagcgtcatcccttacaaacacggaatacccctttagtcacatcagaggcgtcgaa |
46756650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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