View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14534_low_21 (Length: 243)

Name: NF14534_low_21
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14534_low_21
NF14534_low_21
[»] chr5 (17 HSPs)
chr5 (20-223)||(4268101-4268303)
chr5 (20-223)||(27292436-27292638)
chr5 (20-223)||(25730810-25731012)
chr5 (20-223)||(15988732-15988934)
chr5 (20-223)||(20204957-20205159)
chr5 (20-212)||(41940720-41940910)
chr5 (20-211)||(8388100-8388290)
chr5 (20-211)||(26597440-26597630)
chr5 (58-223)||(11375534-11375698)
chr5 (20-223)||(27532889-27533091)
chr5 (20-223)||(12660318-12660520)
chr5 (20-146)||(34652237-34652363)
chr5 (49-223)||(22767269-22767442)
chr5 (20-136)||(32632603-32632719)
chr5 (20-106)||(23074950-23075036)
chr5 (47-129)||(30222848-30222930)
chr5 (98-192)||(37448158-37448251)
[»] chr1 (14 HSPs)
chr1 (20-223)||(44527255-44527457)
chr1 (20-224)||(5609340-5609543)
chr1 (20-223)||(52109456-52109657)
chr1 (20-223)||(16816780-16816984)
chr1 (20-223)||(4395161-4395362)
chr1 (20-211)||(48949707-48949897)
chr1 (20-223)||(25682653-25682855)
chr1 (23-201)||(51113339-51113516)
chr1 (20-211)||(44602766-44602956)
chr1 (20-216)||(36733705-36733900)
chr1 (27-134)||(2885313-2885420)
chr1 (20-122)||(21031251-21031353)
chr1 (20-142)||(24538569-24538691)
chr1 (51-223)||(48166239-48166410)
[»] chr3 (17 HSPs)
chr3 (20-195)||(53497062-53497236)
chr3 (20-223)||(42340260-42340462)
chr3 (20-211)||(55199525-55199715)
chr3 (20-133)||(27608886-27608999)
chr3 (20-133)||(34497355-34497468)
chr3 (40-162)||(647166-647288)
chr3 (20-129)||(46007394-46007503)
chr3 (20-146)||(24176848-24176974)
chr3 (20-160)||(11020163-11020303)
chr3 (20-222)||(2615496-2615687)
chr3 (20-103)||(27747668-27747751)
chr3 (171-223)||(27941127-27941179)
chr3 (20-137)||(31341708-31341829)
chr3 (38-91)||(19117721-19117774)
chr3 (96-196)||(48227442-48227542)
chr3 (20-143)||(2121162-2121285)
chr3 (133-223)||(647307-647396)
[»] chr4 (20 HSPs)
chr4 (20-223)||(49951315-49951517)
chr4 (20-223)||(28537770-28537970)
chr4 (20-211)||(41835294-41835484)
chr4 (20-216)||(37245835-37246030)
chr4 (21-223)||(18442131-18442330)
chr4 (23-211)||(55735023-55735210)
chr4 (20-223)||(29655649-29655851)
chr4 (20-223)||(21321529-21321734)
chr4 (20-219)||(2064859-2065057)
chr4 (20-211)||(56065643-56065837)
chr4 (20-211)||(51734955-51735144)
chr4 (38-162)||(43840307-43840431)
chr4 (20-160)||(44936065-44936205)
chr4 (20-211)||(51259512-51259703)
chr4 (20-162)||(47226313-47226455)
chr4 (20-196)||(26422585-26422760)
chr4 (20-211)||(28426197-28426387)
chr4 (20-223)||(32577031-32577233)
chr4 (20-211)||(49119383-49119573)
chr4 (20-131)||(24989917-24990027)
[»] chr7 (16 HSPs)
chr7 (20-223)||(16731935-16732137)
chr7 (20-223)||(17710069-17710271)
chr7 (20-211)||(16098504-16098694)
chr7 (20-162)||(29200938-29201080)
chr7 (20-223)||(1581617-1581820)
chr7 (20-211)||(22289255-22289445)
chr7 (20-134)||(3601742-3601856)
chr7 (20-223)||(9328585-9328787)
chr7 (20-146)||(30493593-30493719)
chr7 (20-220)||(17877413-17877602)
chr7 (20-138)||(3275120-3275238)
chr7 (52-131)||(44480893-44480972)
chr7 (119-191)||(30824557-30824628)
chr7 (20-77)||(30824477-30824534)
chr7 (38-117)||(24139138-24139217)
chr7 (21-84)||(47580015-47580078)
[»] chr8 (13 HSPs)
chr8 (20-219)||(23853938-23854136)
chr8 (20-223)||(40588713-40588915)
chr8 (20-223)||(478039-478241)
chr8 (20-218)||(8451106-8451303)
chr8 (20-223)||(13415025-13415227)
chr8 (20-216)||(7127232-7127427)
chr8 (20-216)||(185574-185768)
chr8 (20-132)||(33642747-33642859)
chr8 (20-146)||(3606722-3606848)
chr8 (20-137)||(598220-598337)
chr8 (20-124)||(11870364-11870468)
chr8 (20-77)||(37712220-37712277)
chr8 (38-70)||(36194999-36195031)
[»] chr2 (14 HSPs)
chr2 (20-211)||(88573-88763)
chr2 (20-223)||(34695887-34696089)
chr2 (20-223)||(34718299-34718501)
chr2 (20-211)||(12130621-12130811)
chr2 (20-158)||(1417964-1418102)
chr2 (38-160)||(22845600-22845722)
chr2 (20-162)||(13109852-13109994)
chr2 (20-128)||(26198778-26198886)
chr2 (105-195)||(18345555-18345644)
chr2 (20-143)||(9710036-9710159)
chr2 (24-132)||(11292050-11292157)
chr2 (22-211)||(44017303-44017491)
chr2 (20-75)||(18344277-18344332)
chr2 (20-78)||(35158828-35158886)
[»] chr6 (11 HSPs)
chr6 (20-223)||(14680164-14680366)
chr6 (20-223)||(15605977-15606179)
chr6 (20-223)||(29368039-29368241)
chr6 (20-223)||(28107141-28107343)
chr6 (19-223)||(30801973-30802176)
chr6 (20-219)||(15053158-15053356)
chr6 (20-211)||(19690862-19691052)
chr6 (20-223)||(11731652-11731851)
chr6 (20-114)||(34104448-34104542)
chr6 (21-77)||(21944612-21944668)
chr6 (20-78)||(27443076-27443134)
[»] scaffold0446 (1 HSPs)
scaffold0446 (20-211)||(200-394)
[»] scaffold0922 (1 HSPs)
scaffold0922 (20-125)||(247-352)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-78)||(44227-44285)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4268303 - 4268101
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  4268303 gtaaagataactgagaattaatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagagtagatgagtcgga 4268204  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||| |||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  4268203 ctcgaagaaaacccggtcccacctgttagcatcagcaaagtga-agggcctctagtaaggctactgcctccccctccaaaactgtcatatttgcccgctg 4268105  T
Q  220 ccat 223  Q
    ||||    
T  4268104 ccat 4268101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 27292638 - 27292436
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |||| |||||||||||||| |||||||||| |    
T  27292638 gtaaagataactgataattaatactagaaacaatagcataaaattccaaatcaccatggcctggagacgatagagtttgcactagagcagatgagtcgaa 27292539  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||||||||||||||||||| ||| ||||||||||  |||| ||||||||||||| ||||||||||| | |||| || ||||||  ||||||    
T  27292538 ctcgaagacaacccggtcccatctgttatcatcagcaaagtga-agggcatctagtaaggctattgcctcccccttcaaaacaataatatttgtccgctg 27292440  T
Q  220 ccat 223  Q
    ||||    
T  27292439 ccat 27292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 25731012 - 25730810
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||  ||||||||||  || |||| |||| || ||||||||||||||||||||||||    
T  25731012 gtaaatataactgataaataatactagaaacaataacatagaattcttaatcaccatgaccctgagacgatagagcttgcactagagtagatgagtcgga 25730913  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| | |||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  25730912 ctcgaagacaactcagtcccatctgttcgcatcagcaaagtga-agggcctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctg 25730814  T
Q  220 ccat 223  Q
    ||||    
T  25730813 ccat 25730810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 15988732 - 15988934
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| | | ||| |||| || |||||||||||||| |||| ||||    
T  15988732 gtaaagataactgataaataatactagaaacaataacatagaattccgaatcaccatggcctgaagacgatagagattgcactagagtagctgagacgga 15988831  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    || ||||||||||||||||||| |||| |||| |||||||| |  ||||||| ||||||| |||||||||||||||| ||||| ||||||||  ||||||    
T  15988832 cttgaagacaacccggtcccatatgttcgcatcagcaaagt-aaagggcctcgagtaaggttactgcctccccctccaaaactgtcatatttgtccgctg 15988930  T
Q  220 ccat 223  Q
    ||||    
T  15988931 ccat 15988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 20205159 - 20204957
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||  |||||||||||  ||||||| |||| || ||||||||||||||||||||||||    
T  20205159 gtaaagataactgatatataatactagaaacaatagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagagtagatgagtcgga 20205060  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| |||| ||||||||| |||  | |||||||| | |||||| |||||||||||||||||||||||| | ||| |||||||| |||| ||    
T  20205059 ctcgaagacaactcggttccatctgttcgcaacaacaaagtgaat-ggcctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgttg 20204961  T
Q  220 ccat 223  Q
    ||||    
T  20204960 ccat 20204957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 41940720 - 41940910
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |||| || |||| |||| ||||||||||||||||| |||||||||    
T  41940720 gtaaagataaccggtaaataatactagaaacaatagcatagaattctgaatcacaatggtccagagacgatagagtttgcactagagtagttgagtcgga 41940819  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatatttt 212  Q
    ||||||||||||||||| |||  ||||  ||| |||||||||| | | | |  |||||||||| || |||||||||| ||||| |||||||||    
T  41940820 ctcgaagacaacccggt-ccagttgttcacatgagcaaagtgaat-gacattgagtaaggctattgtctccccctccaaaactgtcatatttt 41940910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 8388290 - 8388100
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||| |||||  || ||||||| |||||||||||||| ||||| |||||||||||| | ||||| ||||  | |||||||||||||| |||||||||    
T  8388290 gtaaagaaaactgaaaaataatactggaaacaatagcataaaattctgaatcaccatggcctggagacgatagcgcttgcactagagtagctgagtcgga 8388191  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||||||||  ||   ||||||||| | ||| || |||||||| ||||||||||||||| ||||| ||||||||    
T  8388190 ctcgaagacaacccggtcccatctgttcccaaccgcaaagtgaat-ggcatcgagtaaggcaactgcctccccctccaaaactgtcatattt 8388100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 26597440 - 26597630
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| ||  || ||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||  | |||||||||||||| |||||||||    
T  26597440 gtaaagataattgaaaaataatactagaaacaataacataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcgga 26597539  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||| ||||| ||  ||   ||||||||| | ||| || |||||||| ||||||||||||||| ||| | ||||||||    
T  26597540 ctcgaagacaacccggtctcatctattcccaactgcaaagtgaat-ggcatcgagtaaggcaactgcctccccctccaaaattgtcatattt 26597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 11375534 - 11375698
Alignment:
Q  58 tagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcattagcaa 157  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||| ||||||| || ||||| |||||||||||||||||| | || ||||  ||||    
T  11375534 tagaattccgaatcaccatggaccggagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaa 11375633  T
Q  158 agtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctgccat 223  Q
    | |||  ||||||| ||||||||||||| |||||||||| ||||| |||||||| | |||||||||    
T  11375634 aatga-agggcctcgagtaaggctactgtctccccctccaaaactgtcatatttactcgctgccat 11375698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 27532889 - 27533091
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||||||| |||||||||||  ||||||| |||||||| ||||||| || ||   |||||||    
T  27532889 gtaaagataactgataaataatacttgaaacaatagcaaagaattctgaatcaccatgacccggagacgataaagtctgcactaaagaagcaaagtcgga 27532988  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||| ||||||||||||||||| ||  ||| |||||||||| | | | || | ||| |||| ||||||||||||| ||||| | ||||||||| |||     
T  27532989 ctcgaaaacaacccggtcccatctattcacatcagcaaagtgaat-gacatcgaataaagctattgcctccccctccaaaactgttatattttcctgcta 27533087  T
Q  220 ccat 223  Q
    ||||    
T  27533088 ccat 27533091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 12660520 - 12660318
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| |||||||  || ||||||||||||||||| |||||||||| |||||||| ||| ||| ||| |||| || |||||||||||||| |||||| ||    
T  12660520 gtaaacataactgaaaaataatactagaaacaatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactagagtagctgagtcaga 12660421  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||| || ||| ||||| ||| ||||  |||||||||||||| | | | || |||||| |||||||||||| |||  | ||| |||||||| |||||||    
T  12660420 ctcgacgataacacggtctcatttgttcacattagcaaagtgaat-gacatcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctg 12660322  T
Q  220 ccat 223  Q
    ||||    
T  12660321 ccat 12660318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 34652237 - 34652363
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| ||||||||||||||||| |||| ||||| |||||||||||| || |||| | || || ||||||||||||||  |||||||     
T  34652237 gtaaagataattgataaataatactagaaacaataacatataattctgaatcaccatggcccagagacggtagagcttgcactagagtagtcgagtcggg 34652336  T
Q  120 ctcgaagacaacccggtcccatctgtt 146  Q
    ||||||||||||||| |||||||||||    
T  34652337 ctcgaagacaacccgatcccatctgtt 34652363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 22767269 - 22767442
Alignment:
Q  49 acaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttag 148  Q
    ||||| ||||||||||| |||| ||||||  |||  || |||| || |||||||||||||   |||||  ||||||||||||||||||||||||||||      
T  22767269 acaatcgcatagaattctgaattaccatgtcccgctgacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgttta 22767368  T
Q  149 cattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctgccat 223  Q
    ||| |||||||||| |  ||  | |||||||||||||||||||||||| ||||  |||||||| |||| ||||||    
T  22767369 catcagcaaagtgaat-agcagcgagtaaggctactgcctccccctccaaaacagtcatatttgcccgttgccat 22767442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 32632719 - 32632603
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||   ||| ||||| ||||||||||  |||||||||| ||||||| ||||  |||||| ||||||| || ||||| |||||||||||| ||    
T  32632719 gtaaagataacaaataaataatattagaaacaatgtcatagaattctgaatcactatggctcggagacgataaagcttacactaaagtagatgagtcaga 32632620  T
Q  120 ctcgaagacaacccggt 136  Q
    ||| |||||||||||||    
T  32632619 ctcaaagacaacccggt 32632603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 23075036 - 23074950
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagag 106  Q
    ||||| ||||||| ||| |||||||| |||||||| |||||||||  |||||||||||||||| ||| ||||||| |||||||||||    
T  23075036 gtaaacataactgataaataatactataaacaataacatagaattatgaatcaccatggaccgaagacgataaagcttgcactagag 23074950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 30222848 - 30222930
Alignment:
Q  47 aaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagaca 129  Q
    |||||||||||||||||||||||||||| ||  ||| ||| ||||  | |||||||||||||| |||||| || |||||||||    
T  30222848 aaacaatagcatagaattccgaatcaccgtgacccgaagacgatagcgcttgcactagagtagctgagtcagattcgaagaca 30222930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 37448251 - 37448158
Alignment:
Q  98 gcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctcccc 192  Q
    |||||||||||| ||| | | |||||||||||||||||| |||||||||  ||| |||||||||| | | | || ||||||||||| ||||||||    
T  37448251 gcactagagtagttgaattgaactcgaagacaacccggttccatctgttcacatcagcaaagtgaat-gacatcgagtaaggctaccgcctcccc 37448158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 44527457 - 44527255
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||    
T  44527457 gtaaagataactaataattaatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcacaagagtagatgagtcgga 44527358  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||    
T  44527357 ctcgaagacaacccggtcccatctgttagcatcagcaaagtga-agggcctctagtaaggctactgcctccccctccaaaactgtcatatttgtccgctg 44527259  T
Q  220 ccat 223  Q
    ||||    
T  44527258 ccat 44527255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 5609543 - 5609340
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||  || |||| |||| ||||||||||||||||||||||||| |    
T  5609543 gtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatgaccctgagacgatagagtttgcactagagtagatgagtcgaa 5609444  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||||| || |||||||| |||  | ||||||||  || |||| |||||||||||||||||||||| | ||||||||||||||  ||||||    
T  5609443 ctcgaagacaacccgatctcatctgttcgcaacatcaaagtga-aggacctcgagtaaggctactgcctcccccttcaaaactatcatatttgtccgctg 5609345  T
Q  220 ccata 224  Q
     ||||    
T  5609344 tcata 5609340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 52109657 - 52109456
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||  ||| || ||| |||||||||||||| ||  |    
T  52109657 gtaaagataactgataactaatactagaaacaataacatagaattccgaatcaccatggtccggagacaatagagcttgtactagagtagatgaatcaca 52109558  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||| ||||||||||  |||||||||||||||| ||||||||||  || |||| |||||||||||||| ||||||||| |||  ||||||||| |||||||    
T  52109557 ctcaaagacaaccc-atcccatctgttagcatcagcaaagtga-aggacctcgagtaaggctactgcatccccctccaaaatgatcatatttgcccgctg 52109460  T
Q  220 ccat 223  Q
    ||||    
T  52109459 ccat 52109456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 16816780 - 16816984
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcac---catggaccggagatgataaagtttgcactagagtagatgagtc 116  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||   |||||  |||||| | || |  ||| ||||||||||| |||||    
T  16816780 gtaaagataactgataaataatactagaaacaatagcgtagaattccgaatcacgtccatggctcggagacggtagaacttgaactagagtagacgagtc 16816879  T
Q  117 ggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||  ||||||| |||||||||||||||| ||||||| ||| | |||||||| |||     
T  16816880 ggactcgaagacaacccggtcccatctgtttgcatcagcaaaatga-agggcctcgagtaaggctactgcct-cccctccaaaattgtcatatttgccca 16816977  T
Q  217 ctgccat 223  Q
    |||||||    
T  16816978 ctgccat 16816984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4395362 - 4395161
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||| ||||||||| ||||||||| |||||||||||  |  |||| |||| || |||||||||||||||||||| |||    
T  4395362 gtaaagataactgataaataatactataaacaataggatagaattctgaatcaccatgaccttgagacgatagagcttgcactagagtagatgagttgga 4395263  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||| |||| |||||||||| || |||| ||||||||||  ||||||| |||||||||| ||||| ||||| | ||||| |||||||| |||||||    
T  4395262 ctcgaagataacctggtcccatctattcgcatcagcaaagtga-agggcctcgagtaaggctagtgcct-ccccttcaaaactctcatatttgcccgctg 4395165  T
Q  220 ccat 223  Q
    ||||    
T  4395164 ccat 4395161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 48949707 - 48949897
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  | |||||||||||||| ||||| | |    
T  48949707 gtaaagataactgaaaaataatactagaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaa 48949806  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||||||||  ||  | |||||||| |  || || |||||||| ||||||||||||||| ||||| ||||||||    
T  48949807 ctcgaagacaacccggtcccatctgttcccaacaacaaagtgaat-cgcatcgagtaaggcaactgcctccccctccaaaactttcatattt 48949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 25682855 - 25682653
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || |||||||||||||||||| |||||||||  ||||||  ||| ||||||| |||| || ||| |||||||||| ||||||  |    
T  25682855 gtaaagataactgaaaaataatactagaaacaatagtatagaattctaaatcactgtggcccggagacgatagagcttgtactagagtagctgagtcaaa 25682756  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||| ||||||||||||||||  |||||||||||||| | | | || |||||||||||||||||||||||| | ||| |||||||| |||| ||    
T  25682755 ctcgaagacagcccggtcccatctgttcacattagcaaagtgaat-gacatcgagtaaggctactgcctccccctccaacactgtcatatttgcccgttg 25682657  T
Q  220 ccat 223  Q
    ||||    
T  25682656 ccat 25682653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 51113516 - 51113339
Alignment:
Q  23 aagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactc 122  Q
    ||||||||||  || |||||||||||||||||||||| || ||||||||||||||| || |||| ||||  | |||||||||||||| ||||||||||||    
T  51113516 aagataactgaaaaataatactagaaacaatagcataaaactccgaatcaccatggcccagagacgatagcgcttgcactagagtagctgagtcggactc 51113417  T
Q  123 gaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaac 201  Q
    ||||||||||||||||||||||||  ||  | |||||||| | | | || |||||||| ||||||||||||||| ||||    
T  51113416 gaagacaacccggtcccatctgttcccaacaacaaagtgaat-gacatcgagtaaggcaactgcctccccctccaaaac 51113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 44602956 - 44602766
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||| |||||||||||| || ||||||||||||||  ||||  ||    
T  44602956 gtaaagataactgataaataatactagaaacaatagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagagtagcggagttaga 44602857  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    ||||||| |||||||||| ||||||||  ||| || ||||||| | | | || |||||| ||| || |||||||||| ||| | ||||||||    
T  44602856 ctcgaaggcaacccggtctcatctgttcacatcagtaaagtgaat-gacatcgagtaagactaatgtctccccctccaaaattgtcatattt 44602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 36733900 - 36733705
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||  |||||| ||||| ||||||| |||| || ||||||||||||    ||||| ||    
T  36733900 gtaaagataactgataaataatactagaaacaataacatagaattatgaatcatcatggcccggagacgatatagcttgcactagagttatagagtcaga 36733801  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    |||||||||||||||||||||| ||||  ||| |||||||||| |   | |  |||||| ||||||||||||||||| |||||  ||||||| ||||    
T  36733800 ctcgaagacaacccggtcccatttgttcacatcagcaaagtgaat-aacattgagtaagactactgcctccccctccaaaactgccatatttacccg 36733705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 2885420 - 2885313
Alignment:
Q  27 taactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaag 126  Q
    |||||| ||| |||||||||||||||||||||| || ||||||||||||| | ||| ||| |||| || |||||||||||||| |||||| |||||||||    
T  2885420 taactgataaataatactagaaacaatagcatataactccgaatcaccatagcccgaagacgatagagcttgcactagagtagctgagtctgactcgaag 2885321  T
Q  127 acaacccg 134  Q
    ||||||||    
T  2885320 acaacccg 2885313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 21031353 - 21031251
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| ||||||||||||| ||| |||| |||||||||||||||| | ||||||| |||| || |||||||||| ||| |||||| ||    
T  21031353 gtaaagataattgataaataatactagaaactataacataaaattccgaatcaccatagtccggagacgatagagcttgcactagaatagctgagtcaga 21031254  T
Q  120 ctc 122  Q
    |||    
T  21031253 ctc 21031251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 24538691 - 24538569
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||| | ||| |||||||||||| |||||| |||||||| ||||||| |||  ||| ||  |||| |  ||||||||||||||| ||||| ||    
T  24538691 gtaaagataacagataaataatactagaaataatagcgtagaattctgaatcactatgacccgaagcagatagatcttgcactagagtagaagagtcaga 24538592  T
Q  120 ctcgaagacaacccggtcccatc 142  Q
    |||||| | ||| ||||||||||    
T  24538591 ctcgaaaagaactcggtcccatc 24538569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 48166410 - 48166239
Alignment:
Q  51 aatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagca 150  Q
    ||||||||||||||| | |||||||| | ||  |||  ||| || ||||| |||||||| ||| || ||||||||||||||||| |||||| | ||  ||    
T  48166410 aatagcatagaattctgtatcaccatcgtcccaagactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcaca 48166311  T
Q  151 ttagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctgccat 223  Q
    | |||||||||| | | | || |||||||||| || ||||| |||| ||||| |||||||| | |||||||||    
T  48166310 taagcaaagtgaat-gacatcgagtaaggctattgtctcccactccaaaactgtcatatttgctcgctgccat 48166239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 53497236 - 53497062
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||| |||||||||||||||||    
T  53497236 gtaaagataactgataattaatactagaaacaatagcatagaattccgaatcaccatggcccggagacgatagagcttgcacaagagtagatgagtcgga 53497137  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctc 195  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  53497136 ctcgaagacaacccggtcccatctgttagcatcagcaaagtga-agggcctctagtaaggctactgcctccccctc 53497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 42340260 - 42340462
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||| ||| ||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || | || |||||||| ||||| |||||| ||    
T  42340260 gtaaagatagctgataaataatattagaaacaatagcatagaattctgaatcaccatggcccggagacgacagagcttgcactaaagtagctgagtctga 42340359  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| ||||||||||||||  |||  ||||||||| | | | || |||| ||||| ||||||||||||| | ||| |||||| | |||||||    
T  42340360 ctcgaagacaactcggtcccatctgttcacatctgcaaagtgaat-gacatcgagtagggctattgcctccccctccaacactgtcatatctgcccgctg 42340458  T
Q  220 ccat 223  Q
    ||||    
T  42340459 ccat 42340462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 55199715 - 55199525
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||| ||||  || |||||||||||||||||||||| |||||||||||||||||  ||| ||| ||||  | |||||| ||||||| |||||||||    
T  55199715 gtaaagatgactgaaaaataatactagaaacaatagcataaaattccgaatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagtcgga 55199616  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    || ||||||||||||||||||||||||  ||  | |||||||| | ||| || |||||||| ||||||||||||||| ||||| ||||||||    
T  55199615 cttgaagacaacccggtcccatctgtttccaacaacaaagtgaat-ggcatcgagtaaggcaactgcctccccctccaaaactgtcatattt 55199525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 27608886 - 27608999
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  | |||||||||||||| |||||||||    
T  27608886 gtaaagataactgaaaaataatactagaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcgga 27608985  T
Q  120 ctcgaagacaaccc 133  Q
    ||||||||||||||    
T  27608986 ctcgaagacaaccc 27608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 34497355 - 34497468
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || ||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||  | |||||||||||||| |||||||||    
T  34497355 gtaaagataactgaaaaataatactaggaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcgga 34497454  T
Q  120 ctcgaagacaaccc 133  Q
    ||||||||||||||    
T  34497455 ctcgaagacaaccc 34497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 647166 - 647288
Alignment:
Q  40 atactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtccc 139  Q
    |||||| |||||| | ||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||| |||||||||| ||| ||||| |    
T  647166 atactataaacaacaacatagaattccgaatcaccatggcccggagacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcac 647265  T
Q  140 atctgttagcattagcaaagtga 162  Q
    |||||||  ||| ||||||||||    
T  647266 atctgttcacatcagcaaagtga 647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 46007503 - 46007394
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| ||||||| ||| |||| ||||||||||||||||| ||||||||||| |||||| ||||||| |||| ||||||||||||||||| ||| |||||    
T  46007503 gtaaaaataactgataaataatgctagaaacaatagcataaaattccgaatcgccatggcccggagacgatatagtttgcactagagtagttgaatcgga 46007404  T
Q  120 ctcgaagaca 129  Q
    ||||||||||    
T  46007403 ctcgaagaca 46007394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 24176974 - 24176848
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||  ||| |||||||||| |||||||| ||||||||||||||||||||  || |||| |||| || |||||||||||||| || ||| ||    
T  24176974 gtaaagataacttataaataatactagatacaatagcttagaattccgaatcaccatgacccagagacgatagagcttgcactagagtagttgtgtcaga 24176875  T
Q  120 ctcgaagacaacccggtcccatctgtt 146  Q
    ||||||||||||||  || ||||||||    
T  24176874 ctcgaagacaacccaatctcatctgtt 24176848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 11020163 - 11020303
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| |||||||||||||||||||| ||||||| |||||||||||| ||||||| |||| |  || |||| |||||| | |||| ||    
T  11020163 gtaaagataattgataaataatactagaaacaatagcacagaattctgaatcaccatggcccggagacgatagaccttacactggagtagttaagtcaga 11020262  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagt 160  Q
    |||||||||||||| || |||| ||||  ||| ||||||||    
T  11020263 ctcgaagacaacccagttccatttgttcccatcagcaaagt 11020303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 2615687 - 2615496
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| ||||||| ||| |||||||| |||||||| |||||||||| ||||||||||||  |  ||| |||| || | |||||||||||| |||||||||    
T  2615687 gtaaaaataactgataaataatactaaaaacaatatcatagaattctgaatcaccatggcacaaagacgatagagctcgcactagagtagttgagtcgga 2615588  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
     |  ||||||||    |||||||          ||||||||||  |  | || |||||||||||||||||||||||| |||||||||||||| |||||||    
T  2615587 ttgaaagacaacattttcccatc----------agcaaagtgaacga-catcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctg 2615499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 27747668 - 27747751
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcacta 103  Q
    |||||||||||||  || |||||||| ||||||||||||||||||  |||||||||||| ||||||| |||||||  |||||||    
T  27747668 gtaaagataactgaaaaataatactaaaaacaatagcatagaattttgaatcaccatggcccggagacgataaagcctgcacta 27747751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 27941127 - 27941179
Alignment:
Q  171 ctagtaaggctactgcctccccctccgaaactatcatattttcccgctgccat 223  Q
    |||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  27941127 ctagtaaggctactgcctccccctccaaaactatcatatttgtccgctgccat 27941179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 31341708 - 31341829
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatg----ataaagtttgcactagagtagatgagt 115  Q
    ||||||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||||||  ||||||| |    ||| || ||||||||||||||  ||||    
T  31341708 gtaaagataactgataaataatattagaaacaatagtataaaattctgaatcaccatgacccggagacgtaggatagagcttgcactagagtagtggagt 31341807  T
Q  116 cggactcgaagacaacccggtc 137  Q
    | || ||||||| |||||||||    
T  31341808 cagattcgaagataacccggtc 31341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 19117721 - 19117774
Alignment:
Q  38 taatactagaaacaatagcatagaattccgaatcaccatggaccggagatgata 91  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  19117721 taatactaaaaacaatagcataaaattccgaatcaccatggcccggagacgata 19117774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 48227542 - 48227442
Alignment:
Q  96 ttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctc 195  Q
    ||||||||||||||||||||||||||| |||||||| ||||   |||  ||  ||| ||||||||||  ||| ||| |||||||||||||| |||| |||    
T  48227542 ttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgcatcccactc 48227443  T
Q  196 c 196  Q
    |    
T  48227442 c 48227442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 2121285 - 2121162
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||| | ||||  |||| | ||||| |  ||||  ||| || ||||| |||||||| | |||||||    
T  2121285 gtaaagataactgataaataatactagaaacaatagcacaaaattatgaataatcatggcctagagacaatagagcttgcattagagtagttaagtcgga 2121186  T
Q  120 ctcgaagacaacccggtcccatct 143  Q
    ||| || ||||| || ||||||||    
T  2121185 ctcaaaaacaacacgatcccatct 2121162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 647307 - 647396
Alignment:
Q  133 cggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctgccat 223  Q
    ||||||||||||||  ||| |||||||||| ||  | || ||||||||| ||||||||||||||  |||| |||||||  |||||||||||    
T  647307 cggtcccatctgttcacatcagcaaagtgaatga-catcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccat 647396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 49951517 - 49951315
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| || ||| ||||||||||| ||||||||||||||| ||||||||    
T  49951517 gtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccacggcccgaagatgataaagcttgcactagagtagacgagtcgga 49951418  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| |||| ||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||||||| | ||| |||||||| |||||||    
T  49951417 ctcgaagacaactcggttccatctgttcgcatcagcaaagtga-agggcctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgctg 49951319  T
Q  220 ccat 223  Q
    ||||    
T  49951318 ccat 49951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 28537770 - 28537970
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||| |||||||| | | |||||||||||||||||||||||||||  |||||||||||| || |||| |||| || |||||||| |||||||||||||||    
T  28537770 gtaatgataactgattaataatactagaaacaatagcatagaattttgaatcaccatggcccagagacgatagagcttgcactaaagtagatgagtcgga 28537869  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    || ||| |||||||||||||||||||| |||| | ||||||||  ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  28537870 cttgaacacaacccggtcccatctgttcgcatcaacaaagtga-agggcctcgagtaaggctactgcctccccctc--aaactatcatattttcccgctg 28537966  T
Q  220 ccat 223  Q
    ||||    
T  28537967 ccat 28537970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 41835294 - 41835484
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||  |||||||||||||||||||| ||| |    
T  41835294 gtaaagataactgataaataatactagaaacaatagcataggattccgaatcaccatggcccggagacgatagcgtttgcactagagtagatgaatcgaa 41835393  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    ||||||||||||||||||||||||||| ||||  ||||| |||  ||| ||| |||||||||||||| ||||||||| ||||| ||||||||    
T  41835394 ctcgaagacaacccggtcccatctgtttgcatccgcaaaatga-agggtctcgagtaaggctactgcatccccctccaaaactgtcatattt 41835484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 37245835 - 37246030
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| || |||| || | || |||||||| |||||  ||||| ||    
T  37245835 gtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgaaagagcttgcactaaagtagcagagtcaga 37245934  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    |||||||||||||||||||||||||||  ||| |||||||||| |  || || |||||||||||||||||||||||| ||||| |||||||| ||||    
T  37245935 ctcgaagacaacccggtcccatctgttcacataagcaaagtgaat-agcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcccg 37246030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 18442131 - 18442330
Alignment:
Q  21 taaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggac 120  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||  ||| |||| || |||||||  ||||||||||||| ||    
T  18442131 taaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatgggccaaagacgatatagcttgcact--agtagatgagtcgcac 18442228  T
Q  121 tcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctgc 220  Q
    ||||| | |||||||| ||||||||| |||  |||||||||   ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||| |    
T  18442229 tcgaaaataacccggttccatctgttcgcaacagcaaagtg-tagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgcttc 18442327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 55735210 - 55735023
Alignment:
Q  23 aagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactc 122  Q
    |||||||||| | | |||||||||||||||||||||||||||| |||||||||||| ||| ||| |||| || |||||||||||||||||| ||||||||    
T  55735210 aagataactgatcaataatactagaaacaatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactc 55735111  T
Q  123 gaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    ||| | |||||||| |||| |||| |||  | ||||||||  ||||||| |||||||||||||||||||||||| | ||| ||||||||    
T  55735110 gaaaataacccggttccatgtgttcgcaacaacaaagtga-agggcctcgagtaaggctactgcctccccctccaatactgtcatattt 55735023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 29655649 - 29655851
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||| ||| ||| ||||||||||||||||| |||||||||| |||||||||||| ||| |||||||| || ||||||||||||||   |||| ||    
T  29655649 gtaaagatagctgataaataatactagaaacaataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactagagtagcgtagtcaga 29655748  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| |||| |||||||||  ||| |||||||||| | | | || ||||||||||||||||| |||||| ||||  |||||||| |||||||    
T  29655749 ctcgaagacaacacggttccatctgttcacatcagcaaagtgaat-gacatcgagtaaggctactgcctctccctccaaaacagtcatatttgcccgctg 29655847  T
Q  220 ccat 223  Q
    ||||    
T  29655848 ccat 29655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 21321734 - 21321529
Alignment:
Q  20 gtaaagataactggtaattaatactagaa-acaatagcatagaattccgaatcaccatggaccggagatgataaagt--ttgcactagagtagatgagtc 116  Q
    |||||| |||||| ||| ||||| | ||| |||||| |||||||||| |||||||||||  || ||||  ||| ||   |||||||||||||||||||||    
T  21321734 gtaaagctaactgataaataatattggaacacaataacatagaattctgaatcaccatgaccctgagacaatagagcaattgcactagagtagatgagtc 21321635  T
Q  117 ggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    ||||||||||||||||||||||||||||||||||| || |||||||  ||||||| |||||||||| || |||||||||| ||||| |||||||| ||||    
T  21321634 ggactcgaagacaacccggtcccatctgttagcatcagaaaagtga-agggcctcgagtaaggctattgtctccccctccaaaactgtcatatttgcccg 21321536  T
Q  217 ctgccat 223  Q
     ||||||    
T  21321535 ttgccat 21321529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 2065057 - 2064859
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||  | ||||| |||| || |||  |||||||||||||||| ||    
T  2065057 gtaaagataactgataaataatactagaaacaatagcatataatttcgaatcaccatgacctggagacgatagagcttgggctagagtagatgagtccga 2064958  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||| |||||||||||   |||||||||  ||| ||||||||||  |||| || |||||||||||||||||||||| | | ||| |||||||| |||||||    
T  2064957 ctcaaagacaacccgactccatctgttctcatcagcaaagtga-agggcgtcgagtaaggctactgcctcccccttcaatactgtcatatttgcccgctg 2064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 56065837 - 56065643
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaat----caccatggaccggagatgataaagtttgcactagagtagatgagt 115  Q
    |||||||||||||  || ||||| |||||||||||||||| ||||||||||    |||||||| | ||||||||||  | |||||||||||||| |||||    
T  56065837 gtaaagataactgaaaaataatattagaaacaatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcactagagtagctgagt 56065738  T
Q  116 cggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||||||| | ||  ||  |||||||||| | ||| || |||||||| ||||||||||||||| ||||| ||||||||    
T  56065737 cggactcgaagacaacccggtcccatatattcccaacagcaaagtgaat-ggcatcgagtaaggcaactgcctccccctccaaaactgtcatattt 56065643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 51734955 - 51735144
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||| | ||| ||||||||||||||||| |||||||||  |||||||||||| || |||| |||| || ||||||||||||||| ||| | ||    
T  51734955 gtaaagataacagataaataatactagaaacaatatcatagaattatgaatcaccatggtccagagacgatagagcttgcactagagtagaggagcctga 51735054  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||| | |||| |||| ||  ||| |||||||||| | ||| || |||||||||||||||||||||||| ||||| ||||||||    
T  51735055 ctcgaagacaactc-gtcctatctattcacatcagcaaagtgaat-ggcatcgagtaaggctactgcctccccctccaaaactgtcatattt 51735144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 43840307 - 43840431
Alignment:
Q  38 taatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtc 137  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| || ||||| |||||||| ||||||| |||||||||||| ||||||    
T  43840307 taatactagaaacaatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtc 43840406  T
Q  138 ccatctgttagcattagcaaagtga 162  Q
     ||| ||||  ||| ||||||||||    
T  43840407 tcatttgttcacatcagcaaagtga 43840431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 44936065 - 44936205
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||| ||||||||||| ||||||||||  ||||||| ||| ||| | | |||| |||||||||||||||| ||||||||||    
T  44936065 gtaaagataactgataaataataatagaaacaataacatagaattctaaatcaccgtggcccgaaaacgatagagtttgcactagagtaaatgagtcgga 44936164  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagt 160  Q
    |||||| |||||||  |  |||||||| |||||||||||||    
T  44936165 ctcgaacacaacccaatttcatctgtttgcattagcaaagt 44936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 51259512 - 51259703
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || ||||||||||||||||| |||| ||||| |||||||||||| ||| ||| ||||  | |||||||||||||| |||||||||    
T  51259512 gtaaagataactgaaaaataatactagaaacaataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagagtagctgagtcgga 51259611  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcct-ccccctccgaaactatcatattt 211  Q
    ||||||||||||| ||||| | ||| |  ||  |||||||||| | | | || |||||||| ||||||| |||||||| ||||| ||||||||    
T  51259612 ctcgaagacaacctggtccgaactgatcccaacagcaaagtgaat-gacatcgagtaaggcaactgcctcccccctccaaaactgtcatattt 51259703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 47226313 - 47226455
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| |||||||||||||||||||||| || || |||||||||||| | | ||| |||| || |||| ||| |||||||||||||||    
T  47226313 gtaaagataattgataaataatactagaaacaatagcatataaatctgaatcaccatggcctgaagacgatagagcttgctctaaagtagatgagtcgga 47226412  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtga 162  Q
    |||||| ||||| || || |||||||| |||| ||||||||||    
T  47226413 ctcgaacacaactcgatctcatctgttcgcatcagcaaagtga 47226455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26422585 - 26422760
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||| ||||||| ||||||||||| ||||||| |||  |||  || |||| || |||||||||||||   ||||| ||    
T  26422585 gtaaagataactgataaataatactaaaaacaatcgcatagaattctgaatcactatgtcccgctgacgatagagcttgcactagagtatcagagtcaga 26422684  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctcc 196  Q
    ||||||||||||||| |||||||||||  ||| |||||||| | |  || || ||||||||||||||||||| ||||    
T  26422685 ctcgaagacaacccgatcccatctgtttacatcagcaaagtaaat-agcatcgagtaaggctactgcctccctctcc 26422760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 28426387 - 28426197
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||| ||||| |||||  ||| ||||||  |||  || |||| || | |||||||||||   ||||| ||    
T  28426387 gtaaagataactgataaataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcaga 28426288  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    || ||||||||||||||||||||||||  ||| |||||||||| |  ||  | |||||||||||||||||||||||| ||||  ||||||||    
T  28426287 cttgaagacaacccggtcccatctgtttacatcagcaaagtgaat-agcagcgagtaaggctactgcctccccctccaaaacagtcatattt 28426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 32577031 - 32577233
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||| ||||||| ||||||||||| |||||||||||  |||  || |||  || ||||||||||||||  ||||| ||    
T  32577031 gtaaagataactgataaataatactataaacaatcgcatagaattctgaatcaccatgtcccgctgacgattgagcttgcactagagtagcagagtcaga 32577130  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||||| ||||||| ||||  ||| |||||||| | |  ||  | |||||||||| | ||||||||||| ||||  |||||||| |||| ||    
T  32577131 ctcgaagacaacccagtcccatatgtttacatcagcaaagtaaat-agcagcgagtaaggctagtacctccccctccaaaacagtcatatttgcccgttg 32577229  T
Q  220 ccat 223  Q
    ||||    
T  32577230 ccat 32577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 49119383 - 49119573
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||| ||||| |||||  ||| ||||||  |||  || |||| || | |||||||||||   ||||| ||    
T  49119383 gtaaagataactgataaataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcaga 49119482  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    || ||||||||||||||||||||||||  ||| |||||||||| |  ||  | |||||||||||||||||||||||| ||||  ||||||||    
T  49119483 cttgaagacaacccggtcccatctgtttacatcagcaaagtgaat-agcagcgagtaaggctactgcctccccctccaaaacagtcatattt 49119573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 24989917 - 24990027
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||| || |||||||||  |||||||| ||| || |||| | || || |||||||||||||| |||||| ||    
T  24989917 gtaaagataactgataaataatactagaaaca-taacatagaattttgaatcaccgtggcccagagacggtagagcttgcactagagtagctgagtcaga 24990015  T
Q  120 ctcgaagacaac 131  Q
    ||| ||||||||    
T  24990016 ctcaaagacaac 24990027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 16732137 - 16731935
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||| || ||||||||||||||| ||||||||    
T  16732137 gtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcgga 16732038  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| |||| ||||||||| |||| |||| ||||| | |||||| |||||||||||||||||||||||| | ||| |||||||| ||| |||    
T  16732037 ctcgaagacaactcggttccatctgttcgcatcagcagagtgaat-ggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctg 16731939  T
Q  220 ccat 223  Q
    ||||    
T  16731938 ccat 16731935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 17710271 - 17710069
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||| || ||||||||||||||| ||||||||    
T  17710271 gtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcgga 17710172  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| |||| ||||||||| |||| |||| ||||| | |||||| |||||||||||||||||||||||| | ||| |||||||| ||| |||    
T  17710171 ctcgaagacaactcggttccatctgttcgcatcagcagagtgaat-ggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctg 17710073  T
Q  220 ccat 223  Q
    ||||    
T  17710072 ccat 17710069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 16098694 - 16098504
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||| ||||||| |||  || ||| ||||||||||||||||||||    
T  16098694 gtaaagataactgataactaatactagaaacaatatcatagaattctgaatcaccatggcccggagacgatggagcttgtactagagtagatgagtcgga 16098595  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||| ||||||||| |||||| |||  |||||||||||||||||||| |||| |||||| ||| | ||||||||    
T  16098594 ctcgaagacaacccggtcccatttgttagcatcagcaaattga-agggcctctagtaaggctactacctctccctccaaaattgtcatattt 16098504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 29200938 - 29201080
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| || |||| |||| || |||||||||||||| |||||| ||    
T  29200938 gtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagagtagctgagtcaga 29201037  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtga 162  Q
    ||||||||||||||| | |||||||||  ||| ||||||||||    
T  29201038 ctcgaagacaacccgtttccatctgttcacatcagcaaagtga 29201080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 1581820 - 1581617
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||| || ||||||| |||||||||| ||||||||||||| ||||||| |||| |||||||| ||| |||||||||| |||    
T  1581820 gtaaagataactgataaataatattataaacaatggcatagaatttcgaatcaccatggtccggagacgatagagtttgcattagtgtagatgagttgga 1581721  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcct-ccccctccgaaactatcatattttcccgct 218  Q
    ||| || | |||||| || |||||||| |||| ||||||||||  ||||||| |||||||||||||| | |||||||  ||||||| |||||| ||| ||    
T  1581720 ctccaatagaacccgatctcatctgttcgcatcagcaaagtga-agggcctcgagtaaggctactgcatcccccctcaaaaactataatatttgccctct 1581622  T
Q  219 gccat 223  Q
    |||||    
T  1581621 gccat 1581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 22289445 - 22289255
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||  | |||||||||||||| |||||||||    
T  22289445 gtaaagataactgaaaaataatactagaaacaatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcgga 22289346  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||| ||||||||||| ||||  ||   ||||||||| | ||| || |||||||| ||  ||||||||||| ||||| ||||||||    
T  22289345 ctcgaagacagcccggtcccatttgttcccaacggcaaagtgaat-ggcatcgagtaaggcaaccacctccccctccaaaactgtcatattt 22289255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 3601856 - 3601742
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||| || |||| ||||||| ||||||||||||||||||||||||    
T  3601856 gtaaagataactgataaataatactagaaacaatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagagtagatgagtcgga 3601757  T
Q  120 ctcgaagacaacccg 134  Q
    |||||| ||||||||    
T  3601756 ctcgaaaacaacccg 3601742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 9328585 - 9328787
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||  ||||||||||| |||| ||||||  |||  || |||| || |||||||||||||   ||||| ||    
T  9328585 gtaaagataactgataaataatactagaaacaaacgcatagaattctgaattaccatgtcccgctgacgatagagcttgcactagagtatcagagtcaga 9328684  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||| |||||||||||||||||||||||  ||| |||||||||| |  ||  | |||||||||||||||||||||||| ||||  ||||||||||||| ||    
T  9328685 ctccaagacaacccggtcccatctgtttacatcagcaaagtgaat-agcagcgagtaaggctactgcctccccctccaaaacagtcatattttcccgttg 9328783  T
Q  220 ccat 223  Q
    ||||    
T  9328784 ccat 9328787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 30493593 - 30493719
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||||||| ||| ||| |||| || |||||||||||||  |||||||||    
T  30493593 gtaaagataactgataaataatactataaacaatagcataaaattctgaatcaccatggcccgaagacgatagagcttgcactagagtaattgagtcgga 30493692  T
Q  120 ctcgaagacaacccggtcccatctgtt 146  Q
    ||||||||||||| |||| ||||||||    
T  30493693 ctcgaagacaacctggtctcatctgtt 30493719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 17877602 - 17877413
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  ||  | | |||| || ||||||          ||||| ||    
T  17877602 gtaaagataactgataaataatactagaaacaatagcatagaattacgaatcaccatgacccataaacgatagagcttgcac----------gagtcaga 17877513  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||||| | ||||||||| ||||| | |||||||  ||||||  |||||||||||| ||||||||||| | ||| |||||||| |||||||    
T  17877512 ctcgaagacaacccgattccatctgttcgcatttgtaaagtga-agggccttgagtaaggctacttcctccccctccaatactgtcatatttccccgctg 17877414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 3275238 - 3275120
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||||||  || |||||||| ||||||||||||| ||||  |||||| | ||| |  |||||||||  | |||||||||||||| |||||||||    
T  3275238 gtaaagataactgaaaaataatactaaaaacaatagcataaaattatgaatcatcgtggcctagagatgatagcgcttgcactagagtagctgagtcgga 3275139  T
Q  120 ctcgaagacaacccggtcc 138  Q
    |||||||||||||| ||||    
T  3275138 ctcgaagacaacccagtcc 3275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 44480972 - 44480893
Alignment:
Q  52 atagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaac 131  Q
    |||||||| |||||||||||||||||  ||||||| ||||| ||||||| ||||||||  ||||||||||||||||||||    
T  44480972 atagcataaaattccgaatcaccatgacccggagacgataacgtttgcagtagagtagcggagtcggactcgaagacaac 44480893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 30824557 - 30824628
Alignment:
Q  119 actcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccc 191  Q
    |||||||||||||| | ||||||||||| ||||||| |||||||  ||||||| |||||||||||||||||||    
T  30824557 actcgaagacaacctgatcccatctgttcgcattagaaaagtga-agggcctcgagtaaggctactgcctccc 30824628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 30824477 - 30824534
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatg 77  Q
    ||||||||||||| ||| ||| ||||||||||||| |||||||||| |||||||||||    
T  30824477 gtaaagataactgataaataagactagaaacaataacatagaattctgaatcaccatg 30824534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 24139217 - 24139138
Alignment:
Q  38 taatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcg 117  Q
    |||||||||||||||||||||| |||| | ||||| ||||  ||||||| || | || |||||||||||||| |||||||    
T  24139217 taatactagaaacaatagcataaaatttcaaatcaacatgacccggagacgacagagcttgcactagagtagctgagtcg 24139138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 47580078 - 47580015
Alignment:
Q  21 taaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccgga 84  Q
    |||||||||||| ||| ||||||||||  ||||||||||| | || |||||||||||| |||||    
T  47580078 taaagataactgataaataatactagatccaatagcataggactctgaatcaccatggcccgga 47580015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 23854136 - 23853938
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||| || |||||||||||| |||||||||||    
T  23854136 gtaaagataacggataactaatactagaaacaatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagagttgatgagtcgga 23854037  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||| | ||| ||||||||||||| | |||||||| | |||||| ||||||||||||||||| |||||| ||||| ||||||||| ||||||    
T  23854036 ctcgaagacaactcagtctcatctgttagcatcaacaaagtgaat-ggcctcaagtaaggctactgcctcaccctccaaaactgtcatatttttccgctg 23853938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 40588713 - 40588915
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||||| |||| || |||| ||||| ||||||||||||||| || ||    
T  40588713 gtaaagataactgataaataatactataaacaatagcatagaattcagaatcatcatggcccggggacgatagagtttacactagagtagatgaatcaga 40588812  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||| |||||||||||||| |||||||| ||||  |||||  ||  ||||||| |||| ||||||||||||||||||| ||||| | |||||| |||||||    
T  40588813 ctcaaagacaacccggtctcatctgtttgcatccgcaaaacga-agggcctcgagtacggctactgcctccccctccaaaactgttatatttgcccgctg 40588911  T
Q  220 ccat 223  Q
    ||||    
T  40588912 ccat 40588915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 478039 - 478241
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||| ||||||||||| |||| ||| ||||||||||||   ||||||| |||| || ||||||||||||||  ||||| ||    
T  478039 gtaaagataactgataaataatattagaaacaatatcataaaataccgaatcaccataacccggagacgatagagcttgcactagagtagtagagtcaga 478138  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
     ||||||| ||||||||||||||| ||  |||||||||||||| | ||| || |||||||||||||||||||||||| ||||| |||||||| |||| ||    
T  478139 ttcgaagataacccggtcccatctattcacattagcaaagtgaat-ggcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgttg 478237  T
Q  220 ccat 223  Q
    ||||    
T  478238 ccat 478241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 8451106 - 8451303
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||  |||||||||| |||||| |||| |||||||||||||||||  | ||||| ||||||| |||||||| |||||||||||| ||    
T  8451106 gtaaagataactgatanataatactagacacaataacataaaattccgaatcaccatgacctggagacgataaagcttgcactaaagtagatgagtcaga 8451205  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgct 218  Q
    ||||||||||||||||||||||| |||  ||| ||| |||||| | ||  || ||||| |||||||||||||||||| | ||| |||||||| ||||||    
T  8451206 ctcgaagacaacccggtcccatccgttcacatcagcgaagtgaat-ggaatcgagtaaagctactgcctccccctccaacactgtcatatttgcccgct 8451303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 13415227 - 13415025
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| |||||||| ||||||||||||| ||||| |||||||||||| |||| || |||| |  ||||||||||||||| || |||||    
T  13415227 gtaaagataattgataaataatactaaaaacaatagcataaaattcagaatcaccatggcccggggacgatataccttgcactagagtagaagaatcgga 13415128  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||| |||||||| || ||||||||||| ||||  |||||  ||  ||||||| |||||||||||||||||||||||| ||||| ||||||||  ||||||    
T  13415127 ctcaaagacaactcgatcccatctgtttgcatccgcaaaagga-agggcctcgagtaaggctactgcctccccctccaaaactgtcatatttgtccgctg 13415029  T
Q  220 ccat 223  Q
    ||||    
T  13415028 ccat 13415025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 7127427 - 7127232
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||| ||||||||| |||||||| |  ||||||||||| ||||||| || | || |||||||| |||||   |||| ||    
T  7127427 gtaaagataactgataaataatacttgaaacaataacatagaatactaaatcaccatggcccggagacgaaagagcttgcactaaagtagcatagtcaga 7127328  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    ||||||| |||||||||||||||||||  ||| |||||||||| |  || || |||||||||||| ||||||||||| ||||| |||||||| ||||    
T  7127327 ctcgaaggcaacccggtcccatctgttcacatcagcaaagtgaat-agcatcgagtaaggctactacctccccctccaaaactttcatatttgcccg 7127232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 185574 - 185768
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||||||| || | || |||||||| |||||  ||||| ||    
T  185574 gtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggtccggagacgaaagagcttgcactaaagtagcagagtcaga 185673  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccg 216  Q
    |||| |||||||||||| |||||| ||  ||| | |||||||| |  |  || |||||||||||| ||| ||||||| ||||| |||||||| ||||    
T  185674 ctcgtagacaacccggttccatctattcacatcaacaaagtgaat-agtatcgagtaaggctacttcct-cccctccaaaactgtcatatttgcccg 185768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 33642747 - 33642859
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||| ||| |||||| |||||||||||| ||||||| || | || ||||| |||||||||||||| |||    
T  33642747 gtaaagataactgataaataatactagaaacaatatcattgaattctgaatcaccatggcccggagacgacagagcttgcattagagtagatgagttgga 33642846  T
Q  120 ctcgaagacaacc 132  Q
    || ||||||||||    
T  33642847 cttgaagacaacc 33642859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 3606722 - 3606848
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  || |||| |||| |||||| |||| ||| | |||||||||    
T  3606722 gtaaagataactgataaataatactagaaacaatagcatagaattccaagtcaccatgaccctgagacgatagagtttgtactaaagttgttgagtcgga 3606821  T
Q  120 ctcgaagacaacccggtcccatctgtt 146  Q
    || ||| |||||  ||| |||||||||    
T  3606822 cttgaaaacaacttggttccatctgtt 3606848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 598220 - 598337
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| | ||||||||||||  | | ||| |||| || |||||||||||||| | |||| ||    
T  598220 gtaaagataactaataaataatactagaaacaatagcatagaacttcgaatcaccatgacctgaagacgatagagcttgcactagagtagctaagtccga 598319  T
Q  120 ctcgaagacaacccggtc 137  Q
    || |||||||||||||||    
T  598320 cttgaagacaacccggtc 598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 11870468 - 11870364
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  | ||||  ||| || |||||| ||||||| |||||| ||    
T  11870468 gtaaagataactgataaataatactagaaacaatagcatagaaatccgaatcaccatggctccgagacaatagagcttgcacaagagtagctgagtcaga 11870369  T
Q  120 ctcga 124  Q
    |||||    
T  11870368 ctcga 11870364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 37712277 - 37712220
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatg 77  Q
    ||||||||||||  ||| ||||||||||||||||||||||| |||| |||||||||||    
T  37712277 gtaaagataactcataaataatactagaaacaatagcatagtattctgaatcaccatg 37712220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 36194999 - 36195031
Alignment:
Q  38 taatactagaaacaatagcatagaattccgaat 70  Q
    |||||||||||||||||| ||||||||||||||    
T  36194999 taatactagaaacaatagtatagaattccgaat 36195031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 88763 - 88573
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||| |||||| ||| ||||||| |||||||||||||||||||| |||||||||||  |  |||| |||| || ||||||||||||||||||||||||    
T  88763 gtaaagctaactgataaataatactggaaacaatagcatagaattctgaatcaccatgatcttgagacgatagagcttgcactagagtagatgagtcgga 88664  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  88663 ctcgaagacaacccggtcccatctgttagcatcaacaaagtga-agggcctcgagtaaggctactgcctccccctccaaaactgtcatattt 88573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 34695887 - 34696089
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||  ||||||| ||||| | ||||||||||||||  ||||||||    
T  34695887 gtaaagataactggtaaattatactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcgga 34695986  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||||| |||||||| ||  ||| |||||||||| | |||||  |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  34695987 ctcgaagacaacccgttcccatctattgacatcagcaaagtgaat-ggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctg 34696085  T
Q  220 ccat 223  Q
    ||||    
T  34696086 ccat 34696089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 34718299 - 34718501
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||  ||||||| ||||| | ||||||||||||||  ||||||||    
T  34718299 gtaaagataactggtaaattatactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcgga 34718398  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||||| |||||||| ||  ||| |||||||||| | |||||  |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  34718399 ctcgaagacaacccgttcccatctattgacatcagcaaagtgaat-ggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctg 34718497  T
Q  220 ccat 223  Q
    ||||    
T  34718498 ccat 34718501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 12130621 - 12130811
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||||||  ||| |||||||| || ||| ||||||||||||||||| ||    
T  12130621 gtaaatataactgataaataatactagaaataatagcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcaga 12130720  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||| |||||| | |||||| || |||| ||||||||||  | ||||| |||||||||||||||||||||||| | ||||||||||||    
T  12130721 ctcgaagataacccgattccatctatttgcatcagcaaagtga-agagcctcaagtaaggctactgcctccccctccaacactatcatattt 12130811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 1417964 - 1418102
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||||||||| || ||| |||||||||||||||||||||||||||| |||||||||| | || ||||  ||| || ||| ||||||||||||||||| ||    
T  1417964 gtaaagataattgataaataatactagaaacaatagcatagaattctgaatcaccatagtccagagacaatagagcttgaactagagtagatgagtcaga 1418063  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaa 158  Q
    |||||||||||||| |||||||||||| |||| ||||||    
T  1418064 ctcgaagacaacccagtcccatctgtttgcatcagcaaa 1418102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 22845722 - 22845600
Alignment:
Q  38 taatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcgaagacaacccggtc 137  Q
    ||||||||||||||||||| |||||||| |||||||||||  | ||||| |||| || |||||||||||||||| ||| |||||||||||||||||||||    
T  22845722 taatactagaaacaatagcctagaattctgaatcaccatgatctggagacgatagagcttgcactagagtagattagttggactcgaagacaacccggtc 22845623  T
Q  138 ccatctgttagcattagcaaagt 160  Q
    ||||||||| |||| ||||||||    
T  22845622 ccatctgttcgcatcagcaaagt 22845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 13109852 - 13109994
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||| ||||||||||| || |||||| ||||||||||| ||| ||| |||| || || |||||||||||| ||||||||    
T  13109852 gtaaagataactgataaataatactggaaacaatagcttataattccaaatcaccatggcccgaagacgatagagcttccactagagtagaagagtcgga 13109951  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtga 162  Q
    |||||||||||||  |||||||||| | |||| ||| ||||||    
T  13109952 ctcgaagacaaccatgtcccatctgatcgcatcagctaagtga 13109994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 26198886 - 26198778
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||  |  |||| |||| || |||||||||||||| |||||||||    
T  26198886 gtaaagataactggtaaataatactagaaacaatagcatagaatttcaattcaccatgacctagagacgatagagcttgcactagagtagctgagtcgga 26198787  T
Q  120 ctcgaagac 128  Q
    |||||||||    
T  26198786 ctcgaagac 26198778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 18345555 - 18345644
Alignment:
Q  105 agtagatgagtcggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctc 195  Q
    ||||||||||||||| ||||||||||  || |||||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  18345555 agtagatgagtcggattcgaagacaattcgatcccatctgttagcatcagcaaagtga-agggcctcgagtaaggctactgcctccccctc 18345644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 9710159 - 9710036
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||  |||| ||||||  |||  || |||| || |||||||||||||    |||| ||    
T  9710159 gtaaagataactgataaataatactagaaacaattgcatagaattatgaattaccatgtcccgctgacgatagagcttgcactagagtatcaaagtcaga 9710060  T
Q  120 ctcgaagacaacccggtcccatct 143  Q
    ||||||||||||||||||||||||    
T  9710059 ctcgaagacaacccggtcccatct 9710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 11292050 - 11292157
Alignment:
Q  24 agataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggactcg 123  Q
    ||||||||| ||| |||||||| |||||||| |||| ||||  |||||| ||||| ||| | | |||| || |||||||||||||||||||||||||||     
T  11292050 agataactgataaataatactataaacaataacataaaattttgaatcatcatgg-ccgaaaacgatagagcttgcactagagtagatgagtcggactca 11292148  T
Q  124 aagacaacc 132  Q
    |||||||||    
T  11292149 aagacaacc 11292157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 44017303 - 44017491
Alignment:
Q  22 aaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcggact 121  Q
    ||||||||||| ||| |||||| ||||||||| ||||| |||||  ||| ||||||   |||||| |||| || |||||||| ||||   ||||| ||||    
T  44017303 aaagataactgataaataatacaagaaacaatggcatataattcttaatgaccatgtttcggagacgatagagcttgcactaaagtaacggagtcagact 44017402  T
Q  122 cgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    ||||||||||  |||| ||| ||||  ||||||||| |||| | ||| || ||||||| |  || |||||||||| ||||| ||||||||    
T  44017403 cgaagacaacttggtctcatatgttcacattagcaacgtgaat-ggcatcgagtaaggttgttgtctccccctccaaaactgtcatattt 44017491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 18344277 - 18344332
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcacca 75  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||    
T  18344277 gtaaagataactgataattaatactagaaacaatatcatagaattctaaatcacca 18344332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 35158828 - 35158886
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatgg 78  Q
    ||||| |||| || ||| ||||| |||||||||||||||||||||| |||||| |||||    
T  35158828 gtaaaaataattgataaataataatagaaacaatagcatagaattctgaatcatcatgg 35158886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 14680366 - 14680164
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||  |||||||||  | |||||||||||| || ||||| ||||||||| ||||||||    
T  14680366 gtaaagataactgataaataatactagaaacaatagcagagaattttgaatcaccactgcccggagatgatagagcttgcaatagagtagacgagtcgga 14680267  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
     || |||||||| |||| ||||||||| |||| |||| |||||  ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||    
T  14680266 atcaaagacaactcggttccatctgtttgcatcagcagagtga-agggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgctg 14680168  T
Q  220 ccat 223  Q
    ||||    
T  14680167 ccat 14680164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 15605977 - 15606179
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| |||||||||||||||||||||||  ||| |||||||||||  |  |||| |||| || |||||||||||||| |||||||||    
T  15605977 gtaaagataactgataaataatactagaaacaatagcatagtgttctgaatcaccatgacctagagacgatagagcttgcactagagtagctgagtcgga 15606076  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    || ||||||||||||||||||| ||||  ||| | |||||||| | ||| || |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  15606077 cttgaagacaacccggtcccatttgttcccatcaacaaagtgaat-ggcatcgagtaaggctactgcctccccctccaaaactgtcatgttttcccgctg 15606175  T
Q  220 ccat 223  Q
    ||||    
T  15606176 ccat 15606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 29368039 - 29368241
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||| |||  ||||||| |||| || |||||||| |||||||||||||||    
T  29368039 gtaaagataactgataactaatactagaagcaatagcatagaattacgaatcactatgacccggagacgatagagcttgcactatagtagatgagtcgga 29368138  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||| |||    |||||||||| ||||||| ||||||||||  ||||||| ||||||| || ||||||||||||| ||||| ||||||||  ||||||    
T  29368139 ctcgaaaacagttaggtcccatctattagcatcagcaaagtga-agggcctcgagtaaggatattgcctccccctccaaaactgtcatatttatccgctg 29368237  T
Q  220 ccat 223  Q
    ||||    
T  29368238 ccat 29368241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 28107343 - 28107141
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||  ||| ||||||||||||||||| |||||||||| |||||||||||| ||||||| |||| || ||||||||||||||  ||||  ||    
T  28107343 gtaaagataactaataaataatactagaaacaataacatagaattctgaatcaccatggcccggagacgatagagcttgcactagagtagcggagttaga 28107244  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||  | |||||||| ||   ||| ||||||||| | ||| || |||||||||||||||||||||||| ||||| |||||| |  ||||||    
T  28107243 ctcgaagacaacgtgatcccatctattcatatttgcaaagtgaat-ggcatcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctg 28107145  T
Q  220 ccat 223  Q
    ||||    
T  28107144 ccat 28107141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 30801973 - 30802176
Alignment:
Q  19 agtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgg 118  Q
    ||||||| || ||| ||| ||||||||||||||||| ||||||||||| | |||||||||  |||| | |||| || |||||||| ||||| ||| ||||    
T  30801973 agtaaagttatctgataaataatactagaaacaataacatagaattccaagtcaccatggctcggaaacgatagagcttgcactaaagtagctgaatcgg 30802072  T
Q  119 actcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgct 218  Q
    ||||||||||||||  ||||||| | ||  |||  ||||||| | | ||| |||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  30802073 actcgaagacaacctagtcccattttttcacatctgcaaagtaaat-ggcatctagtaaggctactgcctcccccaccaaaactgtcatatttgcccgct 30802171  T
Q  219 gccat 223  Q
    |||||    
T  30802172 gccat 30802176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 15053158 - 15053356
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||| |||| || ||| ||||| || || ||| ||||||||||||||||||||||||| ||| ||| ||||  |||||||||||||||| |||||||||    
T  15053158 gtaaatataattgataaataatattataagcaacagcatagaattccgaatcaccatggcccgaagacgatagcgtttgcactagagtagctgagtcgga 15053257  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    |||||||||||||  ||| ||| | ||  | | ||||| | || | ||| || |||||||||||||||||||||||| | |||||||||||| |||||||    
T  15053258 ctcgaagacaaccttgtctcattttttcacgtcagcaaggcgaat-ggcatcgagtaaggctactgcctccccctccaacactatcatatttacccgctg 15053356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 19690862 - 19691052
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| ||||||||||||||||  ||||||||||| ||||||||||   | |||| |||| || |||||||| ||||| |||||| ||    
T  19690862 gtaaagataactgataaataatactagaaacaatgacatagaattccaaatcaccatgactcagagacgatagagcttgcactaaagtagctgagtcaga 19690961  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||| ||||| ||||||||  ||| |||||||||| | | | || | |||||||| ||||||||| ||| ||||  ||||||||    
T  19690962 ctcgaagacaactcggtcacatctgttcacatcagcaaagtgaat-gacatcgaataaggctattgcctccccttccaaaacggtcatattt 19691052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 11731652 - 11731851
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    ||||||||||||| ||| || ||||||||||| |||||||||| |||||| |||||||| |||||||  ||| || |||||||| | |  | ||||||||    
T  11731652 gtaaagataactgataaatattactagaaacagtagcatagaactccgaaccaccatggcccggagacaatagagcttgcactatattgaaagagtcgga 11731751  T
Q  120 ctcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattttcccgctg 219  Q
    ||||||||||||| | ||| || ||||  ||| ||||||||||  | | ||| ||  ||||| |||||| ||||||| ||||| |||||||| |||||||    
T  11731752 ctcgaagacaacctgttcctatatgttctcatcagcaaagtga-agagtctcgag--aggctgctgcct-cccctccaaaactgtcatatttgcccgctg 11731847  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 34104448 - 34104542
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgag 114  Q
    |||||||||||||  || |||||||| ||||||||||||| ||||| |||||||||||| ||||||| ||||  | |||||||||||||| ||||    
T  34104448 gtaaagataactgaaaaataatactaaaaacaatagcataaaattctgaatcaccatggtccggagacgatagcgcttgcactagagtagctgag 34104542  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 21944612 - 21944668
Alignment:
Q  21 taaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatg 77  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||| |||| ||||||    
T  21944612 taaaaataactgataaataatactagaaacaatagcatagaattctgaattaccatg 21944668  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 27443134 - 27443076
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatgg 78  Q
    |||||||||||||  |  |||||||||||||||||||||| ||||| ||||||||||||    
T  27443134 gtaaagataactgaaatataatactagaaacaatagcataaaattctgaatcaccatgg 27443076  T

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Target: scaffold0446 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 394 - 200
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaat----caccatggaccggagatgataaagtttgcactagagtagatgagt 115  Q
    |||||||||||||  || ||||| |||||||||||||||| ||||||||||    |||||||| | ||||||||||  | |||||||||||||| |||||    
T  394 gtaaagataactgaaaaataatattagaaacaatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcactagagtagctgagt 295  T
Q  116 cggactcgaagacaacccggtcccatctgttagcattagcaaagtgagtgggcctctagtaaggctactgcctccccctccgaaactatcatattt 211  Q
    |||||||||||||||||||||||||| | ||  ||  |||||||||| | ||| || |||||||| ||||||||||||||| ||||| ||||||||    
T  294 cggactcgaagacaacccggtcccatatattcccaacagcaaagtgaat-ggcatcgagtaaggcaactgcctccccctcccaaactgtcatattt 200  T

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Target: scaffold0922 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 247 - 352
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatggaccggagatgataaagtttgcactagagtagatgagtcgga 119  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||| |||| ||||||  | |||||||||| || ||||||||||||||||||||||||    
T  247 gtaaggataactgataaataatactagaaacaatagcatagaattctgaattaccatgacctggagatgatagagcttgcactagagtagatgagtcgga 346  T
Q  120 ctcgaa 125  Q
    ||||||    
T  347 ctcgaa 352  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 44227 - 44285
Alignment:
Q  20 gtaaagataactggtaattaatactagaaacaatagcatagaattccgaatcaccatgg 78  Q
    |||||||||||||  |  |||||||||||||||||||||| ||||| ||||||||||||    
T  44227 gtaaagataactgaaatataatactagaaacaatagcataaaattctgaatcaccatgg 44285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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