View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_low_3 (Length: 582)
Name: NF14534_low_3
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Original strand, 52617639 - 52618196
Alignment:
| Q |
18 |
gaaagtaactcttatttagttctttttatcacaatcttttctgaaccgttttcttttcttgtttaaactttgagcagattactgttctcactgtgtatgt |
117 |
Q |
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| T |
52617639 |
gaaagtaactcttatttagttctttttatcacaatattttctgaaccgttttcttttcttgtttaaactttgagcagattactgttctcactgtgtatgt |
52617738 |
T |
|
| Q |
118 |
attcctctatggtcgcctttatcttgttcttagcgggcttgaagaaggtttgagtacacagaaagccattcgagataataagcctcttcaagtggctctc |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52617739 |
attcctctatggtcgcctttatcttgttcttagtgggcttgaagaaggtttgagtacacagaaagccattcgagataataagcctcttcaagtggctctc |
52617838 |
T |
|
| Q |
218 |
gcatcacagtcctttgttcaaattgggtttttgatggctttgcctatgttaatggaaatcggcttggaaaggggattccgaactgctcttagtgagttca |
317 |
Q |
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| T |
52617839 |
gcatcacagtcctttgttcaaattgggtttttgatggctttgcctatgttaatggaaatcggcttggaaaggggattccgaactgctcttagtgagttca |
52617938 |
T |
|
| Q |
318 |
tattaatgcagttgcagttggctccagttttcttcacattttcgcttgggacaaagactcactattatggaaggacgttgcttcatggaggtgcaaaata |
417 |
Q |
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| T |
52617939 |
tattaatgcagttgcagttggctccagttttcttcacattttcgcttgggacaaagactcactattatggaaggacgttgcttcatggaggtgcaaaata |
52618038 |
T |
|
| Q |
418 |
tagacctactggccgagggtttgtggttttccatgctaaatttgctgacaactatagactttactcccgtagccactttgtcaagggtattgagctaatg |
517 |
Q |
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| T |
52618039 |
tagacctactggccgagggtttgtggttttccatgctaaatttgctgacaactatagactttactcccgtagccattttgtcaagggtattgagctaatg |
52618138 |
T |
|
| Q |
518 |
attttgctcattgtataccaaatttttggcaatggttataggagtgggctttcatatc |
575 |
Q |
| |
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| T |
52618139 |
attttgctcattgtataccaaatttttggcaatggttataggagtgggctttcatatc |
52618196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 86 - 513
Target Start/End: Complemental strand, 408653 - 408226
Alignment:
| Q |
86 |
tttgagcagattactgttctcactgtgtatgtattcctctatggtcgcctttatcttgttcttagcgggcttgaagaaggtttgagtacacagaaagcca |
185 |
Q |
| |
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|||| |||||| |||||||||||||| || |||| |||||||||||||| ||||||||||| || || ||||||||||| |||||| |||| ||||||| |
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| T |
408653 |
tttgtgcagataactgttctcactgtatacatatttctctatggtcgcctctatcttgttctcagtggccttgaagaagggttgagtgcacaaaaagcca |
408554 |
T |
|
| Q |
186 |
ttcgagataataagcctcttcaagtggctctcgcatcacagtcctttgttcaaattgggtttttgatggctttgcctatgttaatggaaatcggcttgga |
285 |
Q |
| |
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| T |
408553 |
ttcgagacaataagcctcttcaagtggctcttgcttctcagtcattcgttcaaattgggtttttaatggccttgcccatgctgatggaaattggcttgga |
408454 |
T |
|
| Q |
286 |
aaggggattccgaactgctcttagtgagttcatattaatgcagttgcagttggctccagttttcttcacattttcgcttgggacaaagactcactattat |
385 |
Q |
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|||||| ||||||||||| |||||||| || ||| | |||||||||||| | ||||| || |||||||| ||||| || ||||| ||||||||||||| | |
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| T |
408453 |
aaggggcttccgaactgcacttagtgaatttatactgatgcagttgcagcttgctcctgtattcttcacgttttccctagggaccaagactcactatttt |
408354 |
T |
|
| Q |
386 |
ggaaggacgttgcttcatggaggtgcaaaatatagacctactggccgagggtttgtggttttccatgctaaatttgctgacaactatagactttactccc |
485 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| || || |||| ||||||||||||||||| || |||||||| || ||||||||||| || | |
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| T |
408353 |
ggaaggacactgcttcatggaggtgcaaaatatagacccacgggtagaggatttgtggttttccatgccaagtttgctgataattatagactttattcgc |
408254 |
T |
|
| Q |
486 |
gtagccactttgtcaagggtattgagct |
513 |
Q |
| |
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| || ||||||||||||||||||||||| |
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|
| T |
408253 |
gaagtcactttgtcaagggtattgagct |
408226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 104 - 474
Target Start/End: Complemental strand, 26002058 - 26001688
Alignment:
| Q |
104 |
ctcactgtgtatgtattcctctatggtcgcctttatcttgttcttagcgggcttgaagaaggtttgagtacacagaaagccattcgagataataagcctc |
203 |
Q |
| |
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||||| || ||||||||||| || || ||||| |||||| ||||| || ||||||||||| ||| | ||| | ||| |||||||| || || ||| |
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| T |
26002058 |
ctcacagtttatgtattcctttacggccgcctctatctttcccttagtggacttgaagaagggctgaacaaacaaagagctattcgagacaacaaagctc |
26001959 |
T |
|
| Q |
204 |
ttcaagtggctctcgcatcacagtcctttgttcaaattgggtttttgatggctttgcctatgttaatggaaatcggcttggaaaggggattccgaactgc |
303 |
Q |
| |
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||||||| ||||| || || || || |||| ||||| || |||||| |||| ||||||||||| ||||| || || ||||| | ||| || || || |
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| T |
26001958 |
ttcaagtagctcttgcttctcaatctgttgtgcaaatcggatttttgttggccttgcctatgttgatggagattggtttggagaagggttttcgtgaggc |
26001859 |
T |
|
| Q |
304 |
tcttagtgagttcatattaatgcagttgcagttggctccagttttcttcacattttcgcttgggacaaagactcactattatggaaggacgttgcttcat |
403 |
Q |
| |
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||||||| || || ||||||| | ||||||||||| || || ||||||||||| ||||| || || || ||||||||||||||||| ||||||||| |
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| T |
26001858 |
gtttagtgattttgtactaatgcaaatacagttggctcctgtatttttcacattttctcttggaacgaaaacacactattatggaaggacattgcttcat |
26001759 |
T |
|
| Q |
404 |
ggaggtgcaaaatatagacctactggccgagggtttgtggttttccatgctaaatttgctgacaactatag |
474 |
Q |
| |
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|||||||| | || ||| |||||| || || || ||||| |||||||| || |||||||| || ||||| |
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| T |
26001758 |
ggaggtgcgcagtacagaggtactggtcggggtttcgtggtgttccatgccaagtttgctgataattatag |
26001688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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