View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14534_low_8 (Length: 403)

Name: NF14534_low_8
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14534_low_8
NF14534_low_8
[»] scaffold0224 (1 HSPs)
scaffold0224 (2-387)||(13316-13701)
[»] chr1 (1 HSPs)
chr1 (2-387)||(42933070-42933455)


Alignment Details
Target: scaffold0224 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 13701 - 13316
Alignment:
Q  2 tttccccaaaatagagactttgttgttttctactcaatggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctga 101  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13701 tttctccaaaataaagactttgttgttttctactcagtggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctga 13602  T
Q  102 tgtgagcagaattggcaaaatcctaatatgatgagctaatgacnnnnnnnnnnnntcatgattttgtgcttgatttctttatagtaggtttcatgataaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  13601 tgtgagcagaattggcaaaatcctaatatgatgagctaatgacaaaaaaaaaaaatcatgattttgtgcttgatttctttatagtaggtttcatgataaa 13502  T
Q  202 gagtataataaagtagtccgggttgttggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttgg 301  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13501 gagtgtaataaagtagtccggtctgttggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttgg 13402  T
Q  302 aagtttctcaccttaagagagtcaaagtggtgtgaaaaaataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc 387  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13401 aagtttctcaccttaagagagtcaaattggtgtgaaaagataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc 13316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 387
Target Start/End: Original strand, 42933070 - 42933455
Alignment:
Q  2 tttccccaaaatagagactttgttgttttctactcaatggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctga 101  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42933070 tttctccaaaataaagactttgttgttttctactcagtggtttactttcatagtttcatatgcggtggaagttatcatcgattactagtttgttgtctga 42933169  T
Q  102 tgtgagcagaattggcaaaatcctaatatgatgagctaatgacnnnnnnnnnnnntcatgattttgtgcttgatttctttatagtaggtttcatgataaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  42933170 tgtgagcagaattggcaaaatcctaatatgatgagctaatgacaaaaaaaaaaaatcatgattttgtgcttgatttctttatagtaggtttcatgataaa 42933269  T
Q  202 gagtataataaagtagtccgggttgttggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttgg 301  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42933270 gagtgtaataaagtagtccggtctgttggattgtagaccttgatatatttttgagggactgactcttgatattagtattaagaaaatttatcaaggttgg 42933369  T
Q  302 aagtttctcaccttaagagagtcaaagtggtgtgaaaaaataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc 387  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42933370 aagtttctcaccttaagagagtcaaattggtgtgaaaagataaccacttaatatgaaagtccgtagaggacgacgtactaagaatc 42933455  T

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