View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14534_low_9 (Length: 377)
Name: NF14534_low_9
Description: NF14534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14534_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 31188614 - 31188966
Alignment:
| Q |
9 |
aggagcacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
108 |
Q |
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| T |
31188614 |
aggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
31188713 |
T |
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| Q |
109 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatca |
207 |
Q |
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| T |
31188714 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatca |
31188813 |
T |
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| Q |
208 |
tatacctaatattttcattacacatattaaggatatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgtt |
307 |
Q |
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| T |
31188814 |
tatacctaatattttcattacacatattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgtt |
31188913 |
T |
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| Q |
308 |
ctccatttgtagcatacgcagcaaccaacttctaaaggatttaagatgataac |
360 |
Q |
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| T |
31188914 |
ctccatttgtagcatacgcagcaaccaacttctaaatgatttaagatgataac |
31188966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 33 - 360
Target Start/End: Original strand, 31200445 - 31200773
Alignment:
| Q |
33 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
132 |
Q |
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| T |
31200445 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
31200544 |
T |
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| Q |
133 |
gacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
231 |
Q |
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| T |
31200545 |
gacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
31200644 |
T |
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| Q |
232 |
tattaaggatatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
331 |
Q |
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| T |
31200645 |
tattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
31200744 |
T |
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| Q |
332 |
ccaacttctaaaggatttaagatgataac |
360 |
Q |
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| T |
31200745 |
ccaacttctaaatgatttaagatgataac |
31200773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 31170908 - 31170982
Alignment:
| Q |
249 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcata |
323 |
Q |
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| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgttctccatttgtagcata |
31170982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 31144770 - 31144848
Alignment:
| Q |
266 |
tacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaagg |
345 |
Q |
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| T |
31144770 |
tacttccaaataagataaaaatattttctagtataacatgttctcca-ttgtagcatatgcagcaacaaacttctaaagg |
31144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 31225277 - 31225191
Alignment:
| Q |
259 |
tactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaaccaacttctaaaggat |
347 |
Q |
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|||||||| ||||||||||||||||| | |||| |||||||||||||| | |||||||||| || |||| ||||||| |||||||| |
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| T |
31225277 |
tactagttgcttccacataagataaact--ttttgtagtatagcttgtttttcatttgtagcttatgcagtcgccaacttataaaggat |
31225191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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