View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14535_low_1 (Length: 517)
Name: NF14535_low_1
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14535_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Original strand, 49637742 - 49638192
Alignment:
| Q |
23 |
aagtgggtgttagttaaataaaaaagannnnnnnnnaacgtggagagagtcagaaaatggatctggtcgttgttattgttgttgttggaggacagtggag |
122 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49637742 |
aagtgggtgttagttaaataaaaaagaggggggg--aacgtggagagagtcagaaaatggatctggtcgttgttattgttgttgttggaggacagtggag |
49637839 |
T |
|
| Q |
123 |
gtagaagggtagggatgaagggtaaatgggtaattttaaaagagagggaaaaggaagagattattcaatttaagtaagttcaaatcacttagttattagg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49637840 |
gtagaagggtagggatgaagggtaaatgggtaattttaaaagagagggaaaaggaagagattattcaatttaagtaagttcaaatcacttagttattagg |
49637939 |
T |
|
| Q |
223 |
agttctctttctgtctttgaaggccaaccacaaactaaaggatttattattcttcattactaggagtattcattttttaaagagggagagaataatagat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49637940 |
agttctctttctgtctttgaaggccaaccacaaactaaaggatttattattcttcattattaggagtattcattttttaaagagggaaagaataatagat |
49638039 |
T |
|
| Q |
323 |
gcaaaatttattttctttttataggtttgttaaagttaaacttcatttatttgatgtgttaattttagtttcaggaaggatgtcaaagggccaatttcca |
422 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
49638040 |
gcaaaatttattttctttttataggttt------gttaaacttcatttatttgatgtgttaattttagtttc----aggatgtcaaagggccaaattcca |
49638129 |
T |
|
| Q |
423 |
tattgttctaattattagtccactttgtttaaactttatatacatacataatagtagtataat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49638130 |
tattgttctaattattagtccactttgtttaaactttatatacatacataatagtagtataat |
49638192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University