View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14535_low_2 (Length: 415)

Name: NF14535_low_2
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14535_low_2
NF14535_low_2
[»] chr5 (22 HSPs)
chr5 (15-415)||(23729707-23730107)
chr5 (15-415)||(23732579-23732979)
chr5 (22-415)||(23644843-23645258)
chr5 (22-415)||(23813316-23813731)
chr5 (15-316)||(23780096-23780417)
chr5 (15-316)||(23867049-23867370)
chr5 (15-316)||(23768847-23769167)
chr5 (15-316)||(23818695-23819015)
chr5 (15-227)||(23674425-23674648)
chr5 (15-227)||(23860163-23860386)
chr5 (318-415)||(23674147-23674244)
chr5 (318-415)||(23860567-23860664)
chr5 (247-316)||(23674318-23674387)
chr5 (247-316)||(23860424-23860493)
chr5 (318-390)||(23780483-23780554)
chr5 (318-390)||(23867436-23867507)
chr5 (371-415)||(23769253-23769297)
chr5 (371-415)||(23819101-23819145)
chr5 (335-405)||(23687221-23687291)
chr5 (335-405)||(23737202-23737272)
chr5 (250-314)||(23687329-23687392)
chr5 (250-314)||(23737310-23737373)
[»] chr2 (1 HSPs)
chr2 (372-409)||(36577819-36577856)
[»] chr3 (2 HSPs)
chr3 (373-407)||(900375-900409)
chr3 (372-404)||(1890698-1890730)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 23730107 - 23729707
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  23730107 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaa 23730008  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  23730007 atttaaaccaagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatt 23729908  T
Q  215 cagtaccaaaatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 314  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  23729907 tagtaccaaaatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcttttaaccaaccatactaat 23729808  T
Q  315 gactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaag 414  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  23729807 gactgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataaccacaatttctctatcaag 23729708  T
Q  415 c 415  Q
    |    
T  23729707 c 23729707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 23732979 - 23732579
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  23732979 acagaaccagaaatgaacacgttgaaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaa 23732880  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    |||||||||||||||||||||||||||||||  ||||| |||||| |||||||||||||||| ||||||| ||| |||||| ||||| ||||||||||||    
T  23732879 atttaaaccaagagcgcaacagtgaaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatt 23732780  T
Q  215 cagtaccaaaatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 314  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23732779 tagtaccaaaatatcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttatgcagctcatagcaggcatttaaccaaacatactaat 23732680  T
Q  315 gactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaag 414  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  23732679 gactgggaattatctaaactgaaatgcaataatgcatgaagagataataaaaacctttaacaaacaaataaatgaaaataaccacaatttctctatcaag 23732580  T
Q  415 c 415  Q
    |    
T  23732579 c 23732579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 23645258 - 23644843
Alignment:
Q  22 cagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaattt 118  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   ||||||||||    
T  23645258 cagaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaattt 23645160  T
Q  119 aaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagt 218  Q
    ||||||||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| |    
T  23645159 aaaccaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcact 23645060  T
Q  219 accaaaatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcattt 298  Q
    |||||||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  23645059 accaaaataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcattt 23644960  T
Q  299 aaccaaacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataacta 398  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  23644959 aaccaaacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataacta 23644860  T
Q  399 caatttctctatcaagc 415  Q
    |||||||||||||||||    
T  23644859 caatttctctatcaagc 23644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 23813316 - 23813731
Alignment:
Q  22 cagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaattt 118  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   ||||||||||    
T  23813316 cagaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaattt 23813414  T
Q  119 aaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagt 218  Q
    ||||||||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| |    
T  23813415 aaaccaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcact 23813514  T
Q  219 accaaaatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcattt 298  Q
    |||||||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  23813515 accaaaataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcattt 23813614  T
Q  299 aaccaaacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataacta 398  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  23813615 aaccaaacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataacta 23813714  T
Q  399 caatttctctatcaagc 415  Q
    |||||||||||||||||    
T  23813715 caatttctctatcaagc 23813731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 23780096 - 23780417
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| ||||    
T  23780096 acagaaccagaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaa 23780195  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    ||||||||||||| ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  23780196 atttaaaccaagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattatt 23780295  T
Q  215 cagtaccaaaata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggc 294  Q
    ||||| |||||||                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  23780296 cagtagcaaaataattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagac 23780395  T
Q  295 atttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||    
T  23780396 atttaaccaaacatactaatga 23780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 23867049 - 23867370
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| ||||    
T  23867049 acagaaccagaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaa 23867148  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    ||||||||||||| ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  23867149 atttaaaccaagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattatt 23867248  T
Q  215 cagtaccaaaata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggc 294  Q
    ||||| |||||||                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  23867249 cagtagcaaaataattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagac 23867348  T
Q  295 atttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||    
T  23867349 atttaaccaaacatactaatga 23867370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 23768847 - 23769167
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    |||||||||| ||| ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  23768847 acagaaccagtaatcaacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaa 23768946  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||    
T  23768947 atttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattatt 23769046  T
Q  215 cagtaccaaaata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggc 294  Q
    ||| |||||||||                     | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23769047 cag-accaaaataattaccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggc 23769145  T
Q  295 atttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||    
T  23769146 atttaaccaaacatactaatga 23769167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 23818695 - 23819015
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaa 114  Q
    |||||||||| ||| ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  23818695 acagaaccagtaatcaacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaa 23818794  T
Q  115 atttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattatt 214  Q
    ||||||||||||| ||||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||    
T  23818795 atttaaaccaagaacgcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattatt 23818894  T
Q  215 cagtaccaaaata--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggc 294  Q
    ||| |||||||||                     | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23818895 cag-accaaaataattaccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggc 23818993  T
Q  295 atttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||    
T  23818994 atttaaccaaacatactaatga 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 23674648 - 23674425
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgca 111  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   ||||||||    
T  23674648 acagaaccagaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgca 23674549  T
Q  112 gaaa-tttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataag 203  Q
    |||| |||||||||||| ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| ||||||||    
T  23674548 gaaattttaaaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataag 23674449  T
Q  204 atagaattattcagtaccaaaata 227  Q
    || | ||| |||||||||||||||    
T  23674448 attgcattgttcagtaccaaaata 23674425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 23860163 - 23860386
Alignment:
Q  15 acagaaccagaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgca 111  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   ||||||||    
T  23860163 acagaaccagaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgca 23860262  T
Q  112 gaaa-tttaaaccaagagcgcaacagtgaaaatattgaagaacttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataag 203  Q
    |||| |||||||||||| ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| ||||||||    
T  23860263 gaaattttaaaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataag 23860362  T
Q  204 atagaattattcagtaccaaaata 227  Q
    || | ||| |||||||||||||||    
T  23860363 attgcattgttcagtaccaaaata 23860386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 318 - 415
Target Start/End: Complemental strand, 23674244 - 23674147
Alignment:
Q  318 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagc 415  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  23674244 tgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatttatttatcaagc 23674147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 23860567 - 23860664
Alignment:
Q  318 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagc 415  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  23860567 tgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatttatttatcaagc 23860664  T

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Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 23674387 - 23674318
Alignment:
Q  247 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23674387 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23674318  T

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Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 23860424 - 23860493
Alignment:
Q  247 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23860424 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23860493  T

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Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 23780483 - 23780554
Alignment:
Q  318 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaa 390  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  23780483 tgggaactatataaact-aaatgcaataatgcatgaggagataataaaaacctttaacaaacaaatatatgaa 23780554  T

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Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 23867436 - 23867507
Alignment:
Q  318 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaa 390  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  23867436 tgggaactatataaact-aaatgcaataatgcatgaggagataataaaaacctttaacaaacaaatatatgaa 23867507  T

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Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 23769253 - 23769297
Alignment:
Q  371 ttaacaaacaaataaatgaaaataactacaatttctctatcaagc 415  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  23769253 ttaacaatcaaataaatgaaaataactacaatttctctatcaagc 23769297  T

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Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 23819101 - 23819145
Alignment:
Q  371 ttaacaaacaaataaatgaaaataactacaatttctctatcaagc 415  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  23819101 ttaacaatcaaataaatgaaaataactacaatttctctatcaagc 23819145  T

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Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 23687291 - 23687221
Alignment:
Q  335 gaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttc 405  Q
    ||||||||||||||||||  ||||||| | ||| |||| |||||||||||  |||||||||||||||||||    
T  23687291 gaaatgcaataatgcatgctgagataacataaaccttttacaaacaaataggtgaaaataactacaatttc 23687221  T

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Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 23737272 - 23737202
Alignment:
Q  335 gaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttc 405  Q
    ||||||||||||||||||  ||||||| | ||| |||| |||||||||||  |||||||||||||||||||    
T  23737272 gaaatgcaataatgcatgctgagataacataaaccttttacaaacaaataggtgaaaataactacaatttc 23737202  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 23687392 - 23687329
Alignment:
Q  250 tgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 314  Q
    |||||| ||||||| ||||| ||||||||||| ||||||| ||||||| || ||||| |||||||    
T  23687392 tgaaaggtttgagatattacaaaatttgtgcaactcatagaaggcattcaa-caaacttactaat 23687329  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 23737373 - 23737310
Alignment:
Q  250 tgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaat 314  Q
    |||||| ||||||| ||||| ||||||||||| ||||||| ||||||| || ||||| |||||||    
T  23737373 tgaaaggtttgagatattacaaaatttgtgcaactcatagaaggcattcaa-caaacttactaat 23737310  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 36577856 - 36577819
Alignment:
Q  372 taacaaacaaataaatgaaaataactacaatttctcta 409  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36577856 taacaaacaaataaatgaaaataactacaatttctcta 36577819  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 900409 - 900375
Alignment:
Q  373 aacaaacaaataaatgaaaataactacaatttctc 407  Q
    ||||||||||||| |||||||||||||||||||||    
T  900409 aacaaacaaataattgaaaataactacaatttctc 900375  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 1890698 - 1890730
Alignment:
Q  372 taacaaacaaataaatgaaaataactacaattt 404  Q
    |||||||||||||||| ||||||||||||||||    
T  1890698 taacaaacaaataaataaaaataactacaattt 1890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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