View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14535_low_3 (Length: 413)

Name: NF14535_low_3
Description: NF14535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14535_low_3
NF14535_low_3
[»] chr3 (7 HSPs)
chr3 (8-257)||(34705601-34705851)
chr3 (255-410)||(46920713-46920870)
chr3 (253-410)||(11031051-11031210)
chr3 (256-410)||(18320211-18320367)
chr3 (258-396)||(52125745-52125886)
chr3 (253-312)||(37609250-37609309)
chr3 (257-314)||(8082496-8082553)
[»] chr4 (6 HSPs)
chr4 (255-410)||(54207843-54208000)
chr4 (260-410)||(9118050-9118202)
chr4 (256-410)||(27742168-27742327)
chr4 (257-410)||(34967697-34967851)
chr4 (258-315)||(30199956-30200013)
chr4 (254-314)||(26695821-26695881)
[»] chr1 (3 HSPs)
chr1 (255-410)||(38007606-38007763)
chr1 (257-396)||(51083951-51084092)
chr1 (258-314)||(14236398-14236454)
[»] chr8 (11 HSPs)
chr8 (258-410)||(11466189-11466343)
chr8 (259-410)||(3429086-3429239)
chr8 (280-345)||(6228067-6228132)
chr8 (256-290)||(6227960-6227994)
chr8 (257-314)||(38526483-38526540)
chr8 (254-314)||(38567668-38567728)
chr8 (257-315)||(20267449-20267507)
chr8 (257-315)||(21054078-21054136)
chr8 (257-314)||(9686364-9686421)
chr8 (251-315)||(18167144-18167208)
chr8 (251-315)||(18630698-18630762)
[»] chr7 (3 HSPs)
chr7 (258-410)||(16849393-16849533)
chr7 (251-336)||(31738260-31738345)
chr7 (257-314)||(31293022-31293079)
[»] chr2 (2 HSPs)
chr2 (255-314)||(15805905-15805964)
chr2 (354-390)||(16627317-16627353)
[»] chr5 (2 HSPs)
chr5 (257-314)||(25898072-25898129)
chr5 (258-314)||(22213266-22213322)
[»] chr6 (1 HSPs)
chr6 (254-314)||(4653571-4653631)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 34705851 - 34705601
Alignment:
Q  8 cgaagaatatacaaacaataccaacaataaattgatccaatttattagcatatattcacgaagactcgataaaaaacaagcaacacttgaaataattatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705851 cgaagaaaatacaaacaataccaacaataaattgatccaacttattagcatatattcacgaagactcgataaaaaacaagcaacacttgaaataattatt 34705752  T
Q  108 ttcattgagctctccaaacaagtttcaaaacctttctt-nnnnnnnnngtttcatcgccaaaatgtagccatcattccttccatgtcatcctagagcctc 206  Q
    |||||||||||||||||| |||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34705751 ttcattgagctctccaaataagtttcaaaacctttcttaaaaaaaaaagtttcatcgccaaaatgtagccatcattccttccatgtcatcttagagcctc 34705652  T
Q  207 ttcttatgttataacaaaccgtgatggagccgtaatgacttcgtaaactta 257  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  34705651 ttcttatgttgtaacaaaccgtgatggggccgtaatgacttcataaactta 34705601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 46920870 - 46920713
Alignment:
Q  255 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||            
T  46920870 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaa 46920771  T
Q  354 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  46920770 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 46920713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 253 - 410
Target Start/End: Original strand, 11031051 - 11031210
Alignment:
Q  253 acttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnn 351  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||          
T  11031051 acttaggagacgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaa 11031150  T
Q  352 nngtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
      |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  11031151 aagtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 11031210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 256 - 410
Target Start/End: Complemental strand, 18320367 - 18320211
Alignment:
Q  256 tagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnng 354  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||        |    
T  18320367 tagggggcgtttgtttcaggaattcataaattaattccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaag 18320268  T
Q  355 tgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  18320267 tgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 18320211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 396
Target Start/End: Original strand, 52125745 - 52125886
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt---nnnnnnnng 354  Q
    |||||||||||||||  ||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||| || |||||           |    
T  52125745 gggggcgtttgtttcgaggattcataaattaatctcgggaataacttacctgggaataaagtagtgggaagtttattcccggatattttgaaaaaaaaag 52125844  T
Q  355 tgtttggttagtattttaatttcccaggaatattttcaaaaa 396  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  52125845 tgtttggttagtattctaattcctcaggaatattttcaaaaa 52125886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 37609309 - 37609250
Alignment:
Q  253 acttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccggga 312  Q
    |||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||    
T  37609309 acttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccggga 37609250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 8082553 - 8082496
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  8082553 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 8082496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 54208000 - 54207843
Alignment:
Q  255 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||            
T  54208000 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtggaaagtttattcctgggtattttaaaaaaaa 54207901  T
Q  354 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  54207900 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 54207843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 410
Target Start/End: Complemental strand, 9118202 - 9118050
Alignment:
Q  260 gggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtgtt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||||| |||        |||||    
T  9118202 gggcgtttgtttcagggattcataaattaatcccaggaataacttacctgaaaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtgtt 9118103  T
Q  359 tggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  9118102 tggttagtattttaatttttcaggaatattttcaaaaaatgttctcataaata 9118050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 256 - 410
Target Start/End: Original strand, 27742168 - 27742327
Alignment:
Q  256 tagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt----nnnnnn 351  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||  |||||||||              
T  27742168 tagggggcgtttgtttcagggattcataaattaattccaggaataacttacctgggaataaagtagtgggaagtttatttatgggtatttttaaaaaaaa 27742267  T
Q  352 nngtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
      |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  27742268 aagtgtttggttagtattttaatttttcaggaatattttcgaaaaatgttcccataaata 27742327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 257 - 410
Target Start/End: Complemental strand, 34967851 - 34967697
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngt 355  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||| |||||| |||         |    
T  34967851 agggggcgtttgtttcatagattcataaattaattccaggaataactta-cctggaataaagtagtgggaagtttattcatgggtattttaaaaaaaaat 34967753  T
Q  356 gtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34967752 gtttggttagtattttaatttcccaggaatattttcaaaaaatgttcccataaata 34967697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 30199956 - 30200013
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 315  Q
    |||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  30199956 gggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 30200013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 26695821 - 26695881
Alignment:
Q  254 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||| |||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  26695821 cttaggggacgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 26695881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 38007763 - 38007606
Alignment:
Q  255 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnn 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||            
T  38007763 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtggaaagtttattcctgggtattttaaaaaaaa 38007664  T
Q  354 gtgtttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38007663 gtgtttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 38007606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 396
Target Start/End: Complemental strand, 51084092 - 51083951
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt--nnnnnnnng 354  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||| |||||          |    
T  51084092 agggggtgtttgtttcggggattcataaattaatcccgggaataacttacatgggaataaagtagtgggaagtttattcctggatattttgaaaaaaaag 51083993  T
Q  355 tgtttggttagtattttaatttcccaggaatattttcaaaaa 396  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  51083992 tgtttggttagtattctaattcctcaggaatattttcaaaaa 51083951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 14236398 - 14236454
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    ||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  14236398 gggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 14236454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 410
Target Start/End: Complemental strand, 11466343 - 11466189
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||        |||    
T  11466343 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtg 11466244  T
Q  357 tttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  11466243 tttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 11466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 259 - 410
Target Start/End: Complemental strand, 3429239 - 3429086
Alignment:
Q  259 ggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtgt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||        ||||    
T  3429239 ggggcgtttgtttcagggattcataaattaatcccaggaataatttacctgggaataaagtagtgggaagtttattcctgggtattttaaaaaaaagtgt 3429140  T
Q  358 ttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    |||||||||||||||||||  ||||||||||||| ||||||||| |||||||||    
T  3429139 ttggttagtattttaatttttcaggaatattttcaaaaaatgtttccataaata 3429086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 6228132 - 6228067
Alignment:
Q  280 cataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggtattt 345  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6228132 cataaattaatcctaggaataacttacccgtgaataaagtagtggaaagtttattcctgggtattt 6228067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 6227960 - 6227994
Alignment:
Q  256 tagggggcgtttgtttcagggattcataaattaat 290  Q
    |||||||||||||||||||||||||||||||||||    
T  6227960 tagggggcgtttgtttcagggattcataaattaat 6227994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 38526483 - 38526540
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||  ||||  ||||||||| ||||||||||||| |||||||||||    
T  38526483 agggggcgtttgtttttgggaaacataaattattcccaggaataacatacccgggaat 38526540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 38567728 - 38567668
Alignment:
Q  254 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    ||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  38567728 cttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 38567668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 20267507 - 20267449
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 315  Q
    ||||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  20267507 agggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 20267449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 21054136 - 21054078
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 315  Q
    ||||||||||||||||| |||| || |||||| |||| |||||||||| ||| ||||||    
T  21054136 agggggcgtttgtttcacggatgcaaaaattattccctggaataactttcccaggaata 21054078  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 9686364 - 9686421
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  9686364 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 9686421  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 18167208 - 18167144
Alignment:
Q  251 aaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 315  Q
    ||||||||| ||||||||||||| |||| || |||||| |||| |||||||| | ||| ||||||    
T  18167208 aaacttaggaggcgtttgtttcatggatacaaaaattattccctggaataacattcccaggaata 18167144  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 18630762 - 18630698
Alignment:
Q  251 aaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaata 315  Q
    ||||||||| ||||||||||||| |||| || |||||| |||| |||||||| | ||| ||||||    
T  18630762 aaacttaggaggcgtttgtttcatggatacaaaaattattccctggaataacattcccaggaata 18630698  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 258 - 410
Target Start/End: Original strand, 16849393 - 16849533
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcctgggta-tttnnnnnnnngtg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||| ||||||||||||||||| |||        |||    
T  16849393 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacc--------------tgggaagtttattcctgggtattttaaaaaaaagtg 16849478  T
Q  357 tttggttagtattttaatttcccaggaatattttc-aaaaatgttcccataaata 410  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  16849479 tttggttagtattttaatttttcaggaatattttcaaaaaatgttcccataaata 16849533  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 31738260 - 31738345
Alignment:
Q  251 aaacttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaataaagtagtggaaagtttattcc 336  Q
    ||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||| | |||||||||||||||| |||||||||||    
T  31738260 aaactaagggagcgtttgtttcggggattcataaattaatcccggaaataacttatctgggaataaagtagtgggaagtttattcc 31738345  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 31293022 - 31293079
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  31293022 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 31293079  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 15805964 - 15805905
Alignment:
Q  255 ttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  15805964 ttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 15805905  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 16627353 - 16627317
Alignment:
Q  354 gtgtttggttagtattttaatttcccaggaatatttt 390  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  16627353 gtgtttggtaagtaatttaatttcccaggaatatttt 16627317  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 25898129 - 25898072
Alignment:
Q  257 agggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    |||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  25898129 agggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 25898072  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 22213266 - 22213322
Alignment:
Q  258 gggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    ||||||||||||||  ||||  || |||||| ||||||||||||| |||||||||||    
T  22213266 gggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaat 22213322  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 4653571 - 4653631
Alignment:
Q  254 cttagggggcgtttgtttcagggattcataaattaatcccaggaataacttacccgggaat 314  Q
    ||||||||||||||||||  ||||  || |||||| ||||||||||||| |||||| ||||    
T  4653571 cttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaat 4653631  T

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